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[186349_at]

Description Y51H7C.1 /REP_DB=WormBase Gene ID /WP=CE22358 /TR=Q9N3I0 /GB=AAK39336.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 51      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 40.4
(-0.6)
A 		91.1
(3)
A 		83.9
(2.5)
A 		6.9
(-3)
A 		84
B 29.7
(-1.7)
A 		55.7
(0.1)
A 		96.6
(3)
A 		11.9
(-3)
A 		85
C 43
(-1.5)
A 		141.8
(3)
A 		15.8
(-2.8)
A 		11.5
(-3)
A 		130
avr 37.7
(-1.1) 		96.2
(3) 		65.4
(0.9) 		10.1
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1932
1 2 3 4 5 6 range
A 51.1
(-2.9)
A 		13.1
(-3)
A 		9.8
(-3)
A 		256.6
(-2.2)
P 		1936.2
(3)
P 		1134.7
(0.5)
P 		1926
B 10.5
(-3)
A 		21.6
(-3)
A 		43.6
(-2.9)
A 		344.3
(-1.8)
P 		1645.8
(3)
P 		1018.5
(0.7)
P 		1635
C 27.8
(-2.9)
A 		24.1
(-2.9)
A 		4.7
(-3)
A 		268.1
(-2.1)
P 		1829
(3)
P 		832.7
(-0.3)
P 		1824
avr 29.8
(-3) 		19.6
(-3) 		19.4
(-3) 		289.7
(-2.1) 		1803.7
(3) 		995.3
(0.3) 		1784
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 14.7
(0.9)
A 		19.8
(2.4)
A 		21.9
(3)
A 		1
(-3)
A 		21
B 9.5
(-0.9)
A 		13.8
(0.4)
A 		22.4
(3)
A 		2.5
(-3)
A 		20
C 14.2
(-1.1)
A 		40.8
(3)
A 		5.5
(-2.4)
A 		1.9
(-3)
A 		39
avr 12.8
(-0.1) 		24.8
(3) 		16.6
(0.9) 		1.8
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 668
1 2 3 4 5 6 range
A 9.4
(-2.9)
A 		4.7
(-3)
A 		2.1
(-3)
A 		65.1
(-2.4)
P 		584.3
(3)
P 		276.3
(-0.2)
P 		582
B 3.7
(-3)
A 		7.2
(-3)
A 		10.6
(-2.9)
A 		91.2
(-2.2)
P 		668.7
(3)
P 		379.8
(0.4)
P 		665
C 10.3
(-2.9)
A 		7.4
(-2.9)
A 		1.2
(-3)
A 		53.9
(-2.5)
P 		591.8
(3)
P 		278.7
(-0.2)
P 		591
avr 7.8
(-3) 		6.4
(-3) 		4.6
(-3) 		70.1
(-2.4) 		614.9
(3) 		311.6
(0) 		610
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186349_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5331
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.1 NCBI
Target Description Y51H7C.1 /REP_DB=WormBase Gene ID /WP=CE22358 /TR=Q9N3I0 /GB=AAK39336.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061576 NCBI Caenorhabditis elegans Y51H7C.1 (Y51H7C.1) mRNA, complete cds. 11/11 A 
SNAP00000035536 ENSEMBL cdna:SNAP chromosome:CEL140:II:1461925:1469560:1 11/11 None
GENEFINDER00000035538 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1467753:1469560:1 11/11 None
Y51H7C.1 ENSEMBL cdna:known chromosome:CEL140:II:1467733:1469600:1 gene:Y51H7C.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1467751-1469559(+) 96.44 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7C.1
Entrez Gene 190173 Entrez gene
SwissProt Q9N3I0 EMBL-EBI
WormBase CE22358 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39336 Hypothetical protein Y51H7C.1 [Caenorhabditis elegans] ref|NP_493977.1| Y51H7C.1 [Caenorhabditis elegans] 1.0E-75
blast AAK39336 Hypothetical protein Y51H7C.1 [Caenorhabditis elegans] ref|NP_493977.1| Y51H7C.1 [Caenorhabditis elegans] 2.0E-75
blast AAK31537 Collagen protein 70 [Caenorhabditis elegans] ref|NP_493978.1| H17B01.2 [Caenorhabditis elegans] 5.0E-67
blast AAK31537 Collagen protein 70 [Caenorhabditis elegans] ref|NP_493978.1| H17B01.2 [Caenorhabditis elegans] 6.0E-67
blast AAK39331 Hypothetical protein Y51H7C.13 [Caenorhabditis elegans] ref|NP_493976.2| Y51H7C.13 [Caenorhabditis elegans] 7.0E-30
Sequence
Target Sequence 
>C. ELEGANS:186349_AT
tagaccaattccaactactaaaactacagtaccccagcagtggaccactctcccaccagg
cccagagccaaccccgggaccaggaccttctggagaatgctgctacatcgaccttcgcag
aatccaggctaccgtatcctgtggagtctccattggaaatcagtgctgccatcaatcttg
ctccggaacctaccagcgtcaaatcaacttgaactactacattctaacacaaatcttccg
taacctcccatccagaattcaatgctccgaggctgttcgtctgggattagtgagatctac
cgagattcaaggattctgtacatccagagttgtcccaggaggtccagttcgcccaccaac
tacagcttccacaccaaaaccaaacggaccagaagtcccagtgaacccaggacgaccaac
ccatcctgcctacccaattgtgccaactagaggatacccaccagctactgcaactccacc
aaacccatatggaccaaaggatgcttatatcacagccgacccaaaacccaattcaggctc
cacacttgttgcatctttctttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGACCAATTCCAACTACTAAAACT 329 651 765 Antisense
GATTCTGTACATCCAGAGTTGTCCC 179 433 1076 Antisense
ATCCAGAGTTGTCCCAGGAGGTCCA 226 39 1086 Antisense
TCCACACCAAAACCAAACGGACCAG 132 283 1132 Antisense
GAAGTCCCAGTGAACCCAGGACGAC 619 335 1156 Antisense
CTACCCAATTGTGCCAACTAGAGGA 276 225 1194 Antisense
TGCCAACTAGAGGATACCCACCAGC 287 585 1205 Antisense
AGGATGCTTATATCACAGCCGACCC 269 57 1262 Antisense
GCTTATATCACAGCCGACCCAAAAC 537 303 1267 Antisense
GCCGACCCAAAACCCAATTCAGGCT 365 275 1279 Antisense
CACACTTGTTGCATCTTTCTTTGCT 435 195 1305 Antisense
Sequence Source Affymetrix Proprietary Database