[Home] | [Total List]

[186348_s_at] Ubiquitin carboxyl-terminal hydrolases family 2

Description F40F12.5B /REP_DB=WormBase Gene ID /WP=CE23713 /TR=Q9U3G1 /GB=CAB54244.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 29      4grp_high_8_8 > 18      6grp_total > 39      4grp_total > 29      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 401.4
(3)
P 		296
(-0.9)
A 		238.6
(-3)
P 		400.8
(3)
P 		163
B 378.4
(3)
P 		335.2
(1.6)
P 		187.4
(-3)
A 		334.3
(1.6)
P 		191
C 437.9
(3)
P 		390.4
(-1)
P 		366.7
(-3)
P 		404.9
(0.2)
P 		71
avr 405.9
(3) 		340.5
(0.2) 		264.2
(-3) 		380
(1.9) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 353.2
(0.2)
P 		498.2
(3)
P 		186.2
(-3)
A 		293.7
(-0.9)
P 		319.1
(-0.4)
P 		289.4
(-1)
P 		312
B 259.9
(2.3)
P 		229.1
(0.5)
P 		170.1
(-3)
P 		232.6
(0.7)
P 		234.5
(0.8)
P 		272.4
(3)
P 		102
C 316.3
(2.8)
P 		240
(-0.3)
P 		223.8
(-1)
P 		174.2
(-3)
P 		321.6
(3)
P 		273.7
(1.1)
P 		147
avr 309.8
(2.4) 		322.4
(3) 		193.4
(-3) 		233.5
(-1.1) 		291.7
(1.6) 		278.5
(1) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 146.1
(3)
P 		64.3
(-2.6)
A 		62.4
(-2.7)
P 		58.7
(-3)
P 		87
B 120.7
(3)
P 		82.8
(0.1)
P 		43.4
(-3)
A 		71.2
(-0.8)
P 		77
C 145
(3)
P 		112.2
(0.4)
P 		127.8
(1.7)
P 		68.3
(-3)
P 		77
avr 137.3
(3) 		86.4
(-1.3) 		77.9
(-2) 		66.1
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 65.1
(-1.9)
P 		177.2
(3)
P 		40.5
(-3)
A 		74.5
(-1.5)
P 		96.3
(-0.6)
P 		70.5
(-1.7)
P 		137
B 90.4
(1.9)
P 		76.3
(0.5)
P 		41.3
(-3)
P 		61.6
(-1)
P 		95.3
(2.4)
P 		101.6
(3)
P 		60
C 117.2
(3)
P 		73.2
(-0.2)
P 		57
(-1.4)
P 		35
(-3)
P 		104.1
(2)
P 		91.6
(1.1)
P 		82
avr 90.9
(1.3) 		108.9
(3) 		46.3
(-3) 		57
(-2) 		98.6
(2) 		87.9
(1) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186348_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6632
Sequence Type Exemplar sequence
Representative Public ID F40F12.5B NCBI
Target Description F40F12.5B /REP_DB=WormBase Gene ID /WP=CE23713 /TR=Q9U3G1 /GB=CAB54244.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027399 NCBI Caenorhabditis elegans F40F12.5 (F40F12.5) mRNA, complete cds. 11/11 None
SNAP00000010925 ENSEMBL cdna:SNAP chromosome:CEL140:III:9898890:9903717:-1 11/11 None
GENEFINDER00000010932 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9898890:9909599:-1 11/11 None
F40F12.5 ENSEMBL cdna:known chromosome:CEL140:III:9898504:9910548:-1 gene:F40F12.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9900819-9910544(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ubiquitin carboxyl-terminal hydrolases family 2
Ensembl F40F12.5
Entrez Gene 176401 Entrez gene
SwissProt Q7JMS4 EMBL-EBI
WormBase CE36647 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAF31477 Hypothetical protein F40F12.5 [Caenorhabditis elegans] ref|NP_001022570.1| F40F12.5 [Caenorhabditis elegans] 0.0
blast F88568 protein F40F12.5 [imported] - Caenorhabditis elegans 0.0
blast S42834 F40F12.5 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 2.2E-5
Pfam IPR000938 EMBL-EBI CAP-Gly domain 1.7E-20
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 2.2E-5
Pfam IPR000938 EMBL-EBI CAP-Gly domain 1.7E-20
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 2.2E-5
Pfam IPR000938 EMBL-EBI CAP-Gly domain 1.7E-20
Sequence
Target Sequence 
>C. ELEGANS:186348_S_AT
aattcgttcgacaaaatcctgcagaaagaaatgaacgagttgaaagtgatcaactgaact
ttcgaattggtgatcaatgtatttggaataataatggagctgaggaaagaggaattatta
aatatattggtttcttgaaagggcacaaaacattatatgctggtgtcgaatttaaaaaca
caattggagcaggcactggtgtcttcaatcgagaacagctattccttgctaaagatggtc
atgctggtttcgttgaactttcttcactggaatcaccatcctcttctatatcatccacgt
ctacatcatcatctcagcatcgtcgtcgattatcttcctcgaggagtcaacagatgccag
ctgcatcgggaacttccattagtgtcccggttaatggacgtcacaatgtgaatggaaagc
aagcgtcgatagaatcactttcggatcctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCGTTCGACAAAATCCTGCAGA 639 175 1325 Antisense
GGAGCAGGCACTGGTGTCTTCAATC 675 519 1510 Antisense
ATCGAGAACAGCTATTCCTTGCTAA 263 37 1532 Antisense
AAAGATGGTCATGCTGGTTTCGTTG 135 123 1555 Antisense
GGTTTCGTTGAACTTTCTTCACTGG 672 505 1570 Antisense
TTTCTTCACTGGAATCACCATCCTC 101 673 1583 Antisense
ATCATCTCAGCATCGTCGTCGATTA 557 29 1632 Antisense
TCGTCGATTATCTTCCTCGAGGAGT 538 605 1647 Antisense
CTCGAGGAGTCAACAGATGCCAGCT 365 229 1662 Antisense
GATGCCAGCTGCATCGGGAACTTCC 483 415 1677 Antisense
GATAGAATCACTTTCGGATCCTCCA 412 425 1752 Antisense
Sequence Source Affymetrix Proprietary Database