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[186347_at]

Description F53C3.11 /REP_DB=WormBase Gene ID /WP=CE19449 /TR=Q9TXT7 /GB=AAC67451.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 43.7
(-1.4)
A 		45.6
(-1.2)
A 		29.9
(-3)
A 		81.6
(3)
A 		52
B 33
(2.6)
A 		34
(3)
A 		21.8
(-2.1)
A 		19.7
(-3)
A 		14
C 40.5
(-0.2)
A 		39.9
(-0.3)
A 		28
(-3)
P 		54.5
(3)
A 		27
avr 39.1
(-0) 		39.8
(0.1) 		26.6
(-3) 		51.9
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 55.8
(2.9)
A 		29.4
(-0.2)
A 		36.9
(0.7)
A 		57
(3)
A 		5.5
(-3)
A 		33.6
(0.3)
A 		52
B 49.7
(1.8)
A 		33.8
(-1.7)
A 		44.3
(0.6)
A 		55.4
(3)
A 		29.9
(-2.5)
A 		27.6
(-3)
A 		28
C 34
(0.9)
A 		31.5
(0.5)
A 		6.2
(-3)
A 		49.4
(3)
A 		35.9
(1.1)
A 		27.1
(-0.1)
A 		43
avr 46.5
(1.5) 		31.6
(-1.4) 		29.1
(-1.9) 		53.9
(3) 		23.8
(-3) 		29.4
(-1.9) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 15.9
(3)
A 		9.9
(-1.4)
A 		7.8
(-3)
A 		11.9
(0)
A 		8
B 10.5
(3)
A 		8.4
(1)
A 		5.1
(-2.1)
A 		4.2
(-3)
A 		6
C 13.4
(3)
A 		11.5
(0.3)
A 		9.8
(-2.1)
P 		9.2
(-3)
A 		4
avr 13.3
(3) 		9.9
(-0.6) 		7.6
(-3) 		8.4
(-2.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.3
(1)
A 		10.5
(1.1)
A 		8
(-0)
A 		14.5
(3)
A 		1.7
(-3)
A 		8.2
(0)
A 		13
B 17.3
(3)
A 		11.2
(-2.2)
A 		10.7
(-2.7)
A 		14.7
(0.8)
A 		12.2
(-1.4)
A 		10.3
(-3)
A 		7
C 12.6
(3)
A 		9.6
(1.4)
A 		1.6
(-3)
A 		9.9
(1.5)
A 		11.6
(2.5)
A 		9.1
(1.1)
A 		11
avr 13.4
(3) 		10.4
(0.3) 		6.8
(-3) 		13
(2.6) 		8.5
(-1.5) 		9.2
(-0.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186347_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4351
Sequence Type Exemplar sequence
Representative Public ID F53C3.11 NCBI
Target Description F53C3.11 /REP_DB=WormBase Gene ID /WP=CE19449 /TR=Q9TXT7 /GB=AAC67451.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062291 NCBI Caenorhabditis elegans F53C3.11 (F53C3.11) mRNA, complete cds. 11/11 None
SNAP00000027225 ENSEMBL cdna:SNAP chromosome:CEL140:II:3904933:3906017:-1 9/11 None
GENEFINDER00000027236 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3904933:3906613:-1 9/11 None
F53C3.11 ENSEMBL cdna:known chromosome:CEL140:II:3905148:3906613:-1 gene:F53C3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3905146-3906612(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53C3.11
Entrez Gene 186164 Entrez gene
SwissProt Q9TXT7 EMBL-EBI
WormBase CE19449 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67451 Hypothetical protein F53C3.11 [Caenorhabditis elegans] ref|NP_494692.1| F53C3.11 [Caenorhabditis elegans] 0.0
blast AAC67451 Hypothetical protein F53C3.11 [Caenorhabditis elegans] ref|NP_494692.1| F53C3.11 [Caenorhabditis elegans] 1.0E-155
blast AAA93430 Hypothetical protein C27D9.1 [Caenorhabditis elegans] ref|NP_494851.1| C27D9.1 [Caenorhabditis elegans] 3.0E-37
blast CAE73215 Hypothetical protein CBG20621 [Caenorhabditis briggsae] 1.0E-36
blast AAA93430 Hypothetical protein C27D9.1 [Caenorhabditis elegans] ref|NP_494851.1| C27D9.1 [Caenorhabditis elegans] 2.0E-34
blast CAE73215 Hypothetical protein CBG20621 [Caenorhabditis briggsae] 2.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 9.7E-16
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 8.4E-12
Sequence
Target Sequence 
>C. ELEGANS:186347_AT
gagtggacagtttttgccacgtcaaataattgacaaaatgctgctgacgtggcaagtgaa
aaaagtcatcctagtttttgaatgtgaagaatctactgccaaaacctgctggacagaagt
tcaagacaaattttccacattaaacttcaccacagaatttgaaaaaacacaacacgctcc
acctggtattcaactacaaagtgtgaaacttttcttgatacatagttcgtatttcggttt
aggttttgaaaatcacatgaaactgaatggtttgtttgattttgaaaatatcattgcgaa
tgtgaagcgagtttttccaactaatgaattgcacgtggatctgccagtgcagctgatgaa
tactgcgttggtggactttcatgcattcctcgatactatatttgatttcacttggaagga
ttttaaaaattttcgggactcgaatatatatttcagactgctttccggcagattggatga
gcctgtaaatcccgtgaaagtaagtgttttgtacattaatcctacacttctaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGGACAGTTTTTGCCACGTCAA 11 401 708 Antisense
AAGAATCTACTGCCAAAACCTGCTG 692 151 794 Antisense
TTTTCCACATTAAACTTCACCACAG 326 677 838 Antisense
CGCTCCACCTGGTATTCAACTACAA 71 255 882 Antisense
GCACGTGGATCTGCCAGTGCAGCTG 585 315 1038 Antisense
ATACTGCGTTGGTGGACTTTCATGC 473 23 1067 Antisense
ACTTTCATGCATTCCTCGATACTAT 143 103 1082 Antisense
ATATATTTCAGACTGCTTTCCGGCA 668 19 1153 Antisense
GCTTTCCGGCAGATTGGATGAGCCT 14 305 1167 Antisense
ATGAGCCTGTAAATCCCGTGAAAGT 285 43 1184 Antisense
GTACATTAATCCTACACTTCTAAAA 78 461 1218 Antisense
Sequence Source Affymetrix Proprietary Database