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[186346_at]

Description Y48C3A.11 /REP_DB=WormBase Gene ID /WP=CE22144 /TR=Q9NAG1 /GB=CAB55110.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 17      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_total > 05      4grp_total > 31      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 384.2
(3)
P 		177.4
(-3)
P 		203.5
(-2.2)
P 		260.8
(-0.6)
P 		207
B 408.2
(3)
P 		137.6
(-3)
P 		144.3
(-2.9)
P 		296.6
(0.5)
P 		271
C 383.5
(3)
P 		206.6
(-0.6)
P 		89.5
(-3)
P 		200.5
(-0.7)
P 		294
avr 392
(3) 		173.9
(-2.3) 		145.8
(-3) 		252.6
(-0.4) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 267.2
(3)
P 		198.6
(0.8)
P 		84.9
(-2.8)
P 		155.1
(-0.6)
P 		117.5
(-1.8)
P 		78.9
(-3)
A 		188
B 267.1
(3)
P 		181
(-0)
P 		156.4
(-0.9)
P 		130.7
(-1.8)
P 		151.2
(-1)
P 		95.1
(-3)
P 		172
C 256.2
(3)
P 		189.5
(0.1)
P 		162.6
(-1)
P 		117.1
(-3)
P 		145.8
(-1.7)
P 		116.2
(-3)
P 		140
avr 263.5
(3) 		189.7
(0.3) 		134.6
(-1.6) 		134.3
(-1.6) 		138.2
(-1.5) 		96.7
(-3) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 139.9
(3)
P 		38.5
(-3)
P 		53.2
(-2.1)
P 		38.2
(-3)
P 		102
B 130.2
(3)
P 		34
(-3)
P 		33.4
(-3)
P 		63.2
(-1.2)
P 		97
C 127
(3)
P 		59.4
(-1.2)
P 		31.2
(-3)
P 		33.8
(-2.8)
P 		96
avr 132.4
(3) 		44
(-2.7) 		39.3
(-3) 		45.1
(-2.6) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 49.3
(0.5)
P 		70.6
(3)
P 		18.5
(-3)
P 		39.3
(-0.6)
P 		35.5
(-1)
P 		19.2
(-2.9)
A 		52
B 92.9
(3)
P 		60.3
(-0.4)
P 		38
(-2.7)
P 		34.6
(-3)
P 		61.4
(-0.2)
P 		35.5
(-2.9)
P 		58
C 94.9
(3)
P 		57.8
(-0.1)
P 		41.4
(-1.5)
P 		23.6
(-3)
P 		47.2
(-1)
P 		38.9
(-1.7)
P 		71
avr 79
(3) 		62.9
(1) 		32.6
(-2.8) 		32.5
(-2.8) 		48
(-0.9) 		31.2
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186346_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2667
Sequence Type Exemplar sequence
Representative Public ID Y48C3A.11 NCBI
Target Description Y48C3A.11 /REP_DB=WormBase Gene ID /WP=CE22144 /TR=Q9NAG1 /GB=CAB55110.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064417 NCBI Caenorhabditis elegans Y48C3A.11 (Y48C3A.11) mRNA, complete cds. 11/11 None
GENEFINDER00000006667 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13340662:13347780:-1 11/11 None
Y48C3A.11 ENSEMBL cdna:known chromosome:CEL140:II:13340662:13347780:-1 gene:Y48C3A.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006618 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13340658-13347777(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48C3A.11
Entrez Gene 190021 Entrez gene
SwissProt Q9NAG1 EMBL-EBI
WormBase CE22144 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55110 Hypothetical protein Y48C3A.11 [Caenorhabditis elegans] ref|NP_496818.1| Y48C3A.11 [Caenorhabditis elegans] 0.0
blast CAE73360 Hypothetical protein CBG20793 [Caenorhabditis briggsae] 1.0E-180
blast XP_394764 PREDICTED: similar to putative myosuppressin receptor; AMSR, partial [Apis mellifera] 9.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496818.1 8 29-51,56-78,90-109,113-135,148-167,208-230,257-279,294-313
Y48C3A.11 8 29-51,56-78,90-109,113-135,148-167,208-230,257-279,294-313
GENEFINDER00000006667 8 29-51,56-78,90-109,113-135,148-167,208-230,257-279,294-313
Sequence
Target Sequence 
>C. ELEGANS:186346_AT
tgtgctgagcgatatcctgctctcaggaataaagtggcctaccagttgagctacacgcaa
agcatttggctcaggaatttgaatttttggctcttctacctggttgccaaggtggttcca
tcgataatcctgtgcataatgacctgcctaattttggaccagctcaagaagattcaagtt
ttaagcgcgcgcttttcgtcagtggagcgcgataagcaacactcgagaacgacaaatatg
atacttgcgataatgattctcttcattattgtcgagcttccacagggtgtgctcgccgtg
ctctccaccgtcaccagtgttaagctgatctatgagctcggtgatttgacggagctcttc
acattgctcacttctatcattattttcacactcttgtgctcgatgaatggaaagattcga
tcagcattcaaagagttgtcgtgtgttcgatcgattggcaggatctttgcgacaatgtgt
ccgccgccgagcccggtcgctgcgagcatctctggacacgatgctcttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCTGAGCGATATCCTGCTCTCA 613 555 547 Antisense
AAGTGGCCTACCAGTTGAGCTACAC 326 159 578 Antisense
TTTGGCTCTTCTACCTGGTTGCCAA 656 665 632 Antisense
GTGGTTCCATCGATAATCCTGTGCA 285 489 658 Antisense
GACCTGCCTAATTTTGGACCAGCTC 436 383 687 Antisense
CGAGCTTCCACAGGGTGTGCTCGCC 384 251 819 Antisense
CTCCACCGTCACCAGTGTTAAGCTG 534 235 849 Antisense
TTCACATTGCTCACTTCTATCATTA 302 687 904 Antisense
CACACTCTTGTGCTCGATGAATGGA 343 195 933 Antisense
ATCTTTGCGACAATGTGTCCGCCGC 656 29 1009 Antisense
CATCTCTGGACACGATGCTCTTCTG 89 213 1053 Antisense
Sequence Source Affymetrix Proprietary Database