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[186345_at]

Description H24K24.2 /REP_DB=WormBase Gene ID /WP=CE23821 /TR=Q9N5K9 /GB=AAF39898.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 21.7
(-1.6)
A 		21.3
(-1.7)
A 		8.5
(-3)
A 		66.3
(3)
A 		58
B 3.2
(-3)
A 		32.9
(0.7)
A 		12.9
(-1.8)
A 		51.6
(3)
P 		48
C 21.3
(-0)
A 		9.3
(-3)
A 		18.2
(-0.8)
A 		33.4
(3)
A 		24
avr 15.4
(-2.6) 		21.2
(-1.7) 		13.2
(-3) 		50.4
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 15.4
(-2.7)
A 		13.9
(-3)
A 		27.5
(0.1)
A 		34.6
(1.7)
A 		25.4
(-0.4)
A 		40.2
(3)
P 		26
B 18.7
(-2)
A 		15.5
(-3)
A 		33.5
(2.9)
A 		33.9
(3)
A 		19.9
(-1.6)
A 		16.1
(-2.8)
A 		18
C 18.5
(-2.7)
A 		17.5
(-3)
A 		36.7
(3)
A 		34
(2.2)
A 		23.5
(-1.1)
A 		26.5
(-0.2)
M 		19
avr 17.5
(-2.4) 		15.6
(-3) 		32.6
(2.5) 		34.2
(3) 		22.9
(-0.6) 		27.6
(0.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.9
(1.6)
A 		4.6
(-1.1)
A 		2.2
(-3)
A 		9.7
(3)
A 		8
B 1
(-3)
A 		8.1
(1.3)
A 		3
(-1.8)
A 		11
(3)
P 		10
C 7.1
(3)
A 		2.7
(-3)
A 		6.3
(1.9)
A 		5.6
(1)
A 		4
avr 5.3
(-1.2) 		5.1
(-1.4) 		3.8
(-3) 		8.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.8
(-3)
A 		4.9
(-1.2)
A 		6
(-0.3)
A 		8.8
(2.1)
A 		7.7
(1.2)
A 		9.8
(3)
P 		7
B 6.5
(-0.8)
A 		5.1
(-3)
A 		8.1
(1.6)
A 		9
(3)
A 		8.1
(1.6)
A 		6
(-1.6)
A 		4
C 6.9
(-0.6)
A 		5.3
(-3)
A 		9.3
(3)
A 		6.8
(-0.8)
A 		7.6
(0.4)
A 		8.9
(2.4)
M 		4
avr 5.4
(-2.4) 		5.1
(-3) 		7.8
(2.2) 		8.2
(3) 		7.8
(2.2) 		8.2
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186345_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15403
Sequence Type Exemplar sequence
Representative Public ID H24K24.2 NCBI
Target Description H24K24.2 /REP_DB=WormBase Gene ID /WP=CE23821 /TR=Q9N5K9 /GB=AAF39898.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070954 NCBI Caenorhabditis elegans H24K24.2 (H24K24.2) mRNA, complete cds. 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:919264-925775(+) 99.56 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 186774 Entrez gene
SwissProt Q4W5T5 EMBL-EBI
WormBase CE38616 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY43999 Hypothetical protein H24K24.2 [Caenorhabditis elegans] ref|NP_503355.2| H24K24.2 [Caenorhabditis elegans] 0.0
blast CAA92801 Hypothetical protein C33A12.12 [Caenorhabditis elegans] emb|CAA22147.1| Hypothetical protein C33A12.12 [Caenorhabditis elegans] ref|NP_501674.1| C33A12.12 [Caenorhabditis elegans] emb|CAB16465.1| C33A12.12 [Caenorhabditis elegans] 6.0E-41
blast CAB02846 Hypothetical protein C48D1.1 [Caenorhabditis elegans] ref|NP_502537.2| C48D1.1 [Caenorhabditis elegans] 2.0E-40
Sequence
Target Sequence 
>C. ELEGANS:186345_AT
gcaccgacaactaaatgcttctcgtagcaccgaaaacttgcattactcgagtttattgaa
actggttattcaaactatgaacatgttcacgtcgagatcaaccttaattaatggtcttca
gtgcttgatttggataataaaccacaaaatggatcaaattggtccagttaatatgttttt
cacacttaaaaaactcctgagcttagctgatttgttgccggaaacgtattcaaatgcgga
aataatacggtcaaatcgattatattgggatgcaattgttaaacttacaaattcggaaaa
caccaattttgatgaaatctgctggacagcaatgaacatgatgtcgaaagtaacctatgc
agctgggaatgcgttcaaaagctgggattcagaacgagcgtacattgttttctcaattct
tgccatatttatgaataaagctaagaacacatcaactcaggatgaactttggaatttgat
taatatgtccatgatgcaaatttattgtcggttaagccaaccgaaaatttatccatttat
cttgaaaattctattcttcaacgcgttctcgaaacttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACCGACAACTAAATGCTTCTCGT 129 315 990 Antisense
GCTTCTCGTAGCACCGAAAACTTGC 599 303 1006 Antisense
ACATGTTCACGTCGAGATCAACCTT 308 107 1070 Antisense
AATGGTCTTCAGTGCTTGATTTGGA 411 163 1099 Antisense
GGTCCAGTTAATATGTTTTTCACAC 41 499 1150 Antisense
GAGCTTAGCTGATTTGTTGCCGGAA 185 389 1188 Antisense
AACCTATGCAGCTGGGAATGCGTTC 423 145 1341 Antisense
GAACGAGCGTACATTGTTTTCTCAA 365 347 1381 Antisense
GTTTTCTCAATTCTTGCCATATTTA 9 449 1396 Antisense
AAAATTCTATTCTTCAACGCGTTCT 606 131 1534 Antisense
CTTCAACGCGTTCTCGAAACTTCAA 612 211 1545 Antisense
Sequence Source Affymetrix Proprietary Database