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[186344_at]

Description Y57G7A.8 /REP_DB=WormBase Gene ID /WP=CE19637 /TR=O76626 /GB=AAC26301.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 19.5
(-1.2)
A 		26
(0.1)
A 		10.4
(-3)
A 		41
(3)
A 		31
B 41.3
(3)
A 		23.2
(-1.4)
A 		16.8
(-3)
A 		35.8
(1.7)
A 		25
C 37.3
(-0.2)
A 		3.5
(-2.8)
A 		0.8
(-3)
A 		77.9
(3)
A 		77
avr 32.7
(0.3) 		17.6
(-1.8) 		9.3
(-3) 		51.6
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 8.7
(-1.7)
A 		1.4
(-3)
A 		35.3
(3)
A 		26.1
(1.4)
A 		19.7
(0.2)
A 		5.8
(-2.2)
A 		34
B 12.7
(-1.5)
A 		6
(-2.6)
A 		3.5
(-3)
A 		5.9
(-2.6)
A 		40.2
(3)
A 		24.2
(0.4)
A 		37
C 21.9
(3)
A 		8
(-2.3)
A 		21.5
(2.8)
A 		8.2
(-2.2)
A 		6.2
(-3)
A 		8.2
(-2.2)
A 		16
avr 14.4
(0.3) 		5.1
(-3) 		20.1
(2.3) 		13.4
(-0.1) 		22
(3) 		12.7
(-0.3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7.1
(3)
A 		5.6
(1)
A 		2.7
(-3)
A 		6
(1.5)
A 		4
B 13.2
(3)
A 		5.7
(-1.8)
A 		3.9
(-3)
A 		7.6
(-0.6)
A 		9
C 12.3
(2.6)
A 		1
(-2.7)
A 		0.3
(-3)
A 		13.1
(3)
A 		13
avr 10.9
(3) 		4.1
(-1.7) 		2.3
(-3) 		8.9
(1.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.6
(-2.1)
A 		0.5
(-3)
A 		7.7
(3)
A 		6.6
(2.1)
A 		5.9
(1.5)
A 		1.4
(-2.3)
A 		7
B 4.4
(-1.6)
A 		2
(-2.5)
A 		0.8
(-3)
A 		1.6
(-2.7)
A 		16.3
(3)
A 		9
(0.2)
A 		16
C 8.1
(3)
A 		2.4
(-2.3)
A 		5.5
(0.6)
A 		1.6
(-3)
A 		2
(-2.6)
A 		2.7
(-2)
A 		7
avr 4.7
(-0.1) 		1.6
(-3) 		4.7
(-0.1) 		3.3
(-1.4) 		8.1
(3) 		4.4
(-0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5605
Sequence Type Exemplar sequence
Representative Public ID Y57G7A.8 NCBI
Target Description Y57G7A.8 /REP_DB=WormBase Gene ID /WP=CE19637 /TR=O76626 /GB=AAC26301.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061540 NCBI Caenorhabditis elegans Y57G7A.8 (Y57G7A.8) mRNA, complete cds. 11/11 None
GENEFINDER00000014174 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1290635:1291553:-1 10/11 None
Y57G7A.8 ENSEMBL cdna:known chromosome:CEL140:II:1290706:1292223:-1 gene:Y57G7A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014156 8/11 Cross Hyb Matching Probes None
GENEFINDER00000004549 1/11 Cross Hyb Matching Probes None
SNAP00000004535 1/11 Cross Hyb Matching Probes None
SNAP00000019406 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1290704-1292222(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G7A.8
Entrez Gene 190361 Entrez gene
SwissProt O76626 EMBL-EBI
WormBase CE19637 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26301 Hypothetical protein Y57G7A.8 [Caenorhabditis elegans] ref|NP_493941.1| Y57G7A.8 [Caenorhabditis elegans] 1.0E-175
blast AAC26301 Hypothetical protein Y57G7A.8 [Caenorhabditis elegans] ref|NP_493941.1| Y57G7A.8 [Caenorhabditis elegans] 1.0E-102
blast CAE46681 Hypothetical protein Y38H8A.7 [Caenorhabditis elegans] ref|NP_001023458.1| Y38H8A.7 [Caenorhabditis elegans] 2.0E-29
blast CAI79219 Hypothetical protein M117.6 [Caenorhabditis elegans] ref|NP_001023321.1| M117.6 [Caenorhabditis elegans] 1.0E-25
blast CAE46681 Hypothetical protein Y38H8A.7 [Caenorhabditis elegans] ref|NP_001023458.1| Y38H8A.7 [Caenorhabditis elegans] 8.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493941.1 1 20-42
Y57G7A.8 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:186344_AT
gtttggcagctgcacaaattctccaatttcagacgatgagctgtgtgcattccagatttt
tgaaatctgaatctcgaagaactcggatcgatgtgaggaacatcaccgccgaattcgtca
tcaacaatttgatcggggaacctgccctgagtattcttggattaagtggagaacaacata
atgtgcaggagatcttcatagctggactaaaaccaatgagatgtccaatcgcaagattga
tccagaacgcggcaaacttttgggtggccgctaaaattcctccagagctcctccacacct
tcagtatctaccccaattcggtgaatcctcagattcttccaggaagacttctcaattggc
ctatcagtaagctattcttgtccaattcgtttcaaaacaaaaatgacgttttttacaata
ttctacatattgtatccggattcgaaggacagttcccgagtgcggattttggagatattt
tctcccgacaggtggaccaaaaattcttgaacgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGGCAGCTGCACAAATTCTCCA 220 453 521 Antisense
AATTCTCCAATTTCAGACGATGAGC 226 177 537 Antisense
GACGATGAGCTGTGTGCATTCCAGA 347 379 552 Antisense
GAAATCTGAATCTCGAAGAACTCGG 177 361 582 Antisense
TGTGAGGAACATCACCGCCGAATTC 11 557 612 Antisense
GCCGAATTCGTCATCAACAATTTGA 64 285 628 Antisense
AATTTGATCGGGGAACCTGCCCTGA 551 169 646 Antisense
AACCTGCCCTGAGTATTCTTGGATT 514 145 659 Antisense
ATTGGCCTATCAGTAAGCTATTCTT 606 3 875 Antisense
GTAAGCTATTCTTGTCCAATTCGTT 290 463 887 Antisense
GTGGACCAAAAATTCTTGAACGCAC 328 491 1012 Antisense
Sequence Source Affymetrix Proprietary Database