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[186342_at]

Description C07D10.5 /REP_DB=WormBase Gene ID /WP=CE01152 /TR=Q17780 /GB=AAK31397.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 82      6grp_total > 85      4grp_total > 30      6grp_highest_sub > In      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 268.3
(3)
P 		170.7
(-0.6)
P 		103.5
(-3)
P 		204.8
(0.7)
P 		165
B 232.3
(2.8)
P 		164.1
(-0.2)
P 		102.9
(-3)
P 		236.2
(3)
P 		133
C 308.2
(3)
P 		177.3
(-1.2)
P 		122
(-3)
P 		195.1
(-0.6)
P 		186
avr 269.6
(3) 		170.7
(-0.7) 		109.5
(-3) 		212
(0.8) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 345.6
(-0.1)
P 		204.7
(-2.9)
P 		198.1
(-3)
P 		508
(3)
P 		446.2
(1.8)
P 		445.1
(1.8)
P 		310
B 288.5
(-1.9)
P 		232.7
(-3)
P 		366.8
(-0.3)
P 		518.6
(2.7)
P 		426.8
(0.9)
P 		535.1
(3)
P 		302
C 269.1
(-2.5)
P 		242.3
(-3)
P 		316.6
(-1.5)
P 		502.3
(2.1)
P 		320.8
(-1.5)
P 		546.7
(3)
P 		304
avr 301.1
(-1.4) 		226.6
(-3) 		293.8
(-1.6) 		509.6
(3) 		397.9
(0.6) 		509
(3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 97.7
(3)
P 		37.1
(-2.2)
P 		27.1
(-3)
P 		30
(-2.8)
P 		71
B 74.1
(3)
P 		40.5
(-1)
P 		23.8
(-3)
P 		50.3
(0.2)
P 		50
C 102
(3)
P 		51
(-1.4)
P 		42.5
(-2.2)
P 		32.9
(-3)
P 		69
avr 91.3
(3) 		42.9
(-1.8) 		31.1
(-3) 		37.7
(-2.3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 63.7
(-1.6)
P 		72.8
(-1.1)
P 		43.1
(-3)
P 		128.8
(2.6)
P 		134.6
(3)
P 		108.4
(1.3)
P 		92
B 100.4
(-1.9)
P 		77.5
(-3)
P 		89.1
(-2.4)
P 		137.4
(-0.1)
P 		173.4
(1.7)
P 		199.6
(3)
P 		122
C 99.7
(-1.6)
P 		73.9
(-3)
P 		80.6
(-2.6)
P 		101
(-1.5)
P 		103.8
(-1.4)
P 		183
(3)
P 		109
avr 87.9
(-1.9) 		74.7
(-2.8) 		70.9
(-3) 		122.4
(0.3) 		137.3
(1.3) 		163.7
(3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5730
Sequence Type Exemplar sequence
Representative Public ID C07D10.5 NCBI
Target Description C07D10.5 /REP_DB=WormBase Gene ID /WP=CE01152 /TR=Q17780 /GB=AAK31397.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063146(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063146 NCBI Caenorhabditis elegans C07D10.5 (C07D10.5) mRNA, complete cds. 11/11 None
SNAP00000000398 ENSEMBL cdna:SNAP chromosome:CEL140:II:7381492:7383240:1 11/11 None
GENEFINDER00000000402 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7378743:7383240:1 11/11 None
C07D10.5 ENSEMBL cdna:known chromosome:CEL140:II:7381490:7383405:1 gene:C07D10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7378810-7383237(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07D10.5
Entrez Gene 174209 Entrez gene
SwissProt Q17780 EMBL-EBI
WormBase CE36628 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31397 Hypothetical protein C07D10.5 [Caenorhabditis elegans] ref|NP_495547.2| C07D10.5 [Caenorhabditis elegans] 0.0
blast CAE67608 Hypothetical protein CBG13153 [Caenorhabditis briggsae] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:186342_AT
taaaccgttctgtagtccacagtttttggcaaaagatgtaatcaatcaatatgcaagcat
agataatcgatttaatactctcgccaactatcttcacaaatttttaaaaggaaaagcagt
gaaaaaaagcgatcagagaaaaattaaatccgtggttccaaagctatgctcattgaaaat
gatgttcattcattgtttcaagcattatgggcttcttccatcaaattcaaattcattgga
agaaaagatggcatctctgagtgtaactaaaaaatactcgatcaatcttgggactctcct
cttccttttccttgactactatctggatgttatttcccttgaaaaagagtatttggaaat
tggaactggagaatctcttattaaacttgacattggactgaccaacaagaacattttatc
aattagtgacatctttgacgatcatgttccaggagaaagagtcaacgatactgttatgtt
gaagaaaattttcaaagcaatgtatttggctgtcctgaagtatctcaacaatcgaaccgg
aattcttctgaacgacttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACCGTTCTGTAGTCCACAGTTT 225 639 861 Antisense
ATTTAATACTCTCGCCAACTATCTT 553 15 930 Antisense
TCGCCAACTATCTTCACAAATTTTT 407 599 941 Antisense
AATCCGTGGTTCCAAAGCTATGCTC 246 167 1007 Antisense
GATGTTCATTCATTGTTTCAAGCAT 114 411 1041 Antisense
GCATTATGGGCTTCTTCCATCAAAT 568 307 1062 Antisense
TACTCGATCAATCTTGGGACTCTCC 61 647 1135 Antisense
TTCCTTTTCCTTGACTACTATCTGG 235 699 1162 Antisense
GTATTTGGCTGTCCTGAAGTATCTC 285 453 1362 Antisense
GAAGTATCTCAACAATCGAACCGGA 525 335 1377 Antisense
CCGGAATTCTTCTGAACGACTTGAA 505 263 1397 Antisense
Sequence Source Affymetrix Proprietary Database