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[186339_at]

Description F56D12.3 /REP_DB=WormBase Gene ID /WP=CE11250 /TR=O16644 /GB=AAB66115.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 38      6grp_cgc > 41      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 149.4
(3)
P 		124.9
(0.2)
A 		96.4
(-3)
A 		135.9
(1.5)
A 		53
B 167.1
(3)
P 		137
(1.5)
A 		83.1
(-1.2)
A 		48.2
(-3)
A 		119
C 130.7
(2.6)
M 		28.7
(-3)
A 		62.7
(-1.1)
P 		138
(3)
A 		109
avr 149.1
(3) 		96.9
(-1.6) 		80.7
(-3) 		107.4
(-0.7) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 130.5
(3)
A 		117.6
(0.9)
A 		93.2
(-3)
A 		111.4
(-0.1)
P 		98.2
(-2.2)
A 		119.4
(1.2)
A 		37
B 112.3
(1.6)
A 		128.8
(3)
A 		61.6
(-2.8)
A 		94
(0)
A 		87.1
(-0.6)
A 		58.9
(-3)
A 		70
C 119.1
(3)
P 		119.1
(3)
A 		117.8
(2.9)
A 		67.9
(-1.4)
A 		74.9
(-0.8)
P 		49.3
(-3)
A 		70
avr 120.6
(2.8) 		121.8
(3) 		90.9
(-1) 		91.1
(-1) 		86.7
(-1.6) 		75.9
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 54.4
(3)
P 		27.1
(-1.7)
A 		25.2
(-2.1)
A 		19.9
(-3)
A 		35
B 53.3
(3)
P 		33.8
(0.3)
A 		19.3
(-1.7)
A 		10.3
(-3)
A 		43
C 43.3
(3)
M 		8.2
(-3)
A 		21.8
(-0.7)
P 		23.3
(-0.4)
A 		35
avr 50.3
(3) 		23
(-2) 		22.1
(-2.2) 		17.8
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 24.1
(-1.9)
A 		41.8
(3)
A 		20.3
(-3)
A 		28.3
(-0.8)
P 		29.6
(-0.4)
A 		29.1
(-0.5)
A 		22
B 39.1
(2.2)
A 		42.9
(3)
A 		15
(-3)
A 		24.9
(-0.9)
A 		35.4
(1.4)
A 		22
(-1.5)
A 		28
C 44.1
(3)
P 		36.3
(1.5)
A 		30
(0.2)
A 		13.7
(-3)
A 		24.2
(-0.9)
P 		16.5
(-2.4)
A 		30
avr 35.8
(1.5) 		40.3
(3) 		21.8
(-3) 		22.3
(-2.8) 		29.7
(-0.4) 		22.5
(-2.8) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186339_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5722
Sequence Type Exemplar sequence
Representative Public ID F56D12.3 NCBI
Target Description F56D12.3 /REP_DB=WormBase Gene ID /WP=CE11250 /TR=O16644 /GB=AAB66115.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061549
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F56D12.4 ENSEMBL cdna:known chromosome:CEL140:II:1327001:1350118:1 gene:F56D12.4 A 
NM_061549 NCBI Caenorhabditis elegans JNK Interacting Protein (scaffold protein) family member (jip-1) (jip-1) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013804 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1337097-1341604(+) 82.48 100.0
Public Domain and Genome References
Gene Title
Gene Symbol jip-1
Ensembl F56D12.4
Entrez Gene 173513 Entrez gene
SwissProt O16643 EMBL-EBI
WormBase CE37024 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66117 Jnk interacting protein (scaffold protein) protein 1 [Caenorhabditis elegans] ref|NP_493950.2| JNK Interacting Protein (scaffold protein) family member (jip-1) [Caenorhabditis elegans] 0.0
blast C88042 protein F56D12.4 [imported] - Caenorhabditis elegans 0.0
blast CAE62912 Hypothetical protein CBG07104 [Caenorhabditis briggsae] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 7.0E-19
Sequence
Target Sequence 
>C. ELEGANS:186339_AT
ccgccggaagattacacgtcgaaggagatgaagaagcggccgccgaatttagcactacaa
actacaatcgacacgattcggtgggttccatatcttggaaaatacaatattttgaaggtt
tttacgttgaaattcggattcagcatagttttttactcctcataccagcaatcatctgga
atggagacacgtaccatcaattccaccactggtaccaatggaattggctcagccggagca
gcagggaaaatcgatccctgtgctcatttggagacacctatatcacctcatatacaaaat
tcaaatttctcgctattttccactctttcttgctttagttttgtgaagtttctagctcaa
tttttaccattctggggtactgtagccccaaaaatacgcaaacactgcgcaccaccttac
gccaaaatgcacagaatccttaaattgtctgaaaaagctgttttagtggtaaaaaatgac
gatatggagctcgccgagttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCCGGAAGATTACACGTCGAAGG 11 261 382 Antisense
GGCCGCCGAATTTAGCACTACAAAC 91 537 419 Antisense
ATCGACACGATTCGGTGGGTTCCAT 481 35 448 Antisense
TTTTTACTCCTCATACCAGCAATCA 595 675 531 Antisense
GAATTGGCTCAGCCGGAGCAGCAGG 654 323 602 Antisense
ATCGATCCCTGTGCTCATTTGGAGA 11 37 631 Antisense
GAGACACCTATATCACCTCATATAC 525 393 652 Antisense
TCAAATTTCTCGCTATTTTCCACTC 74 629 682 Antisense
TCCACTCTTTCTTGCTTTAGTTTTG 358 589 700 Antisense
CACCACCTTACGCCAAAATGCACAG 98 203 791 Antisense
TGACGATATGGAGCTCGCCGAGTTC 586 569 858 Antisense
Sequence Source Affymetrix Proprietary Database