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[186338_at]

Description Y39C12A.9 /REP_DB=WormBase Gene ID /WP=CE25265 /TR=Q9U2L1 /GB=CAB60495.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 80      6grp_total > 50      4grp_total > 36      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 150.6
(-2.7)
P 		175.9
(-0.7)
P 		147.5
(-3)
P 		221.8
(3)
P 		74
B 170.6
(0.8)
P 		209.4
(3)
P 		104.1
(-2.9)
P 		101.9
(-3)
P 		108
C 168.2
(-2.8)
P 		169.5
(-2.6)
P 		201.6
(3)
P 		167.3
(-3)
P 		34
avr 163.1
(-0.9) 		184.9
(3) 		151.1
(-3) 		163.7
(-0.8) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 278.3
(1.9)
P 		211.6
(-0.2)
P 		204.9
(-0.4)
P 		311.8
(3)
P 		163.9
(-1.7)
P 		122.4
(-3)
P 		189
B 129.8
(-1.9)
P 		224.2
(1)
P 		192.3
(0)
P 		287
(3)
P 		119.8
(-2.2)
P 		95.8
(-3)
P 		191
C 242.7
(2)
P 		212.3
(0.7)
P 		267.8
(3)
P 		263
(2.8)
P 		121.2
(-3)
P 		124.3
(-2.9)
P 		147
avr 216.9
(0.6) 		216
(0.5) 		221.7
(0.7) 		287.3
(3) 		135
(-2.3) 		114.2
(-3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 54.8
(3)
P 		38.2
(-1.5)
P 		38.6
(-1.4)
P 		32.5
(-3)
P 		22
B 54.4
(3)
P 		51.7
(2.5)
P 		24.1
(-2.6)
P 		21.7
(-3)
P 		33
C 55.7
(0.9)
P 		48.7
(-0.1)
P 		70.3
(3)
P 		28.2
(-3)
P 		42
avr 55
(3) 		46.2
(1.1) 		44.3
(0.7) 		27.5
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 51.3
(-0.4)
P 		75.2
(2.5)
P 		44.6
(-1.2)
P 		79.1
(3)
P 		49.5
(-0.6)
P 		29.8
(-3)
P 		49
B 45.2
(-1.6)
P 		74.6
(2.8)
P 		46.7
(-1.4)
P 		76
(3)
P 		48.7
(-1.1)
P 		35.7
(-3)
P 		40
C 90
(3)
P 		64.8
(0)
P 		68.2
(0.4)
P 		52.9
(-1.4)
P 		39.2
(-3)
P 		41.6
(-2.7)
P 		51
avr 62.2
(1.4) 		71.5
(3) 		53.2
(-0.1) 		69.3
(2.6) 		45.8
(-1.3) 		35.7
(-3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186338_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8581
Sequence Type Exemplar sequence
Representative Public ID Y39C12A.9 NCBI
Target Description Y39C12A.9 /REP_DB=WormBase Gene ID /WP=CE25265 /TR=Q9U2L1 /GB=CAB60495.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069926 NCBI Caenorhabditis elegans Y39C12A.9 (Y39C12A.9) mRNA, complete cds. 11/11 None
Y39C12A.9 ENSEMBL cdna:known chromosome:CEL140:IV:12257665:12258587:-1 gene:Y39C12A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12257699-12258593(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39C12A.9
Entrez Gene 178172 Entrez gene
SwissProt Q9U2L1 EMBL-EBI
WormBase CE25265 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60495 Hypothetical protein Y39C12A.9 [Caenorhabditis elegans] ref|NP_502327.1| Y39C12A.9 [Caenorhabditis elegans] 2.0E-80
Sequence
Target Sequence 
>C. ELEGANS:186338_AT
gaagtccttacgattataccgggtgtgaccttgataaactccaactagcactagatcatc
aattgagacaacgttatggcgaaccttcaaatgcacctcaacgaataaccgacactccat
cggagggcgacgatgatgataatggccgattgctcaaacgtgctgctatgtttctgattc
ggtggactgtaactgtattcttttttaaaagaatgggaaggacggcagtttcaattctga
agtttttctggaggtttttcgaagacactgtggttcctccagcaaaggaagctatctcaa
acatttttgattcatctttcactcggacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCCTTACGATTATACCGGGTG 308 335 44 Antisense
CCGGGTGTGACCTTGATAAACTCCA 25 265 62 Antisense
GAGACAACGTTATGGCGAACCTTCA 632 387 108 Antisense
GCACCTCAACGAATAACCGACACTC 467 309 136 Antisense
TAACCGACACTCCATCGGAGGGCGA 359 637 149 Antisense
GATAATGGCCGATTGCTCAAACGTG 390 423 181 Antisense
CGTGCTGCTATGTTTCTGATTCGGT 571 245 202 Antisense
GATTCGGTGGACTGTAACTGTATTC 707 429 219 Antisense
GAAGGACGGCAGTTTCAATTCTGAA 57 335 260 Antisense
TTCGAAGACACTGTGGTTCCTCCAG 158 693 301 Antisense
TTGATTCATCTTTCACTCGGACGAA 306 703 350 Antisense
Sequence Source Affymetrix Proprietary Database