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[186337_at]

Description F43C11.3 /REP_DB=WormBase Gene ID /WP=CE20783 /TR=Q9U5B5 /GB=AAF16611.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 72      6grp_total > 82      4grp_total > 58      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 392
1 2 3 4 range
A 158.3
(-1.4)
P 		408
(3)
P 		310
(1.3)
P 		71
(-3)
A 		337
B 186.8
(0)
P 		349.1
(2.9)
P 		352.6
(3)
P 		15.7
(-3)
A 		337
C 201.9
(0)
P 		342.9
(2.6)
P 		367.6
(3)
P 		36.1
(-3)
A 		332
avr 182.3
(-0.4) 		366.7
(3) 		343.4
(2.6) 		40.9
(-3) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 716
1 2 3 4 5 6 range
A 117.8
(-3)
P 		525.3
(0.8)
P 		359.1
(-0.8)
P 		453.3
(0.1)
P 		768.4
(3)
P 		239.1
(-1.9)
P 		651
B 94.9
(-3)
P 		568.3
(1.1)
P 		321
(-1)
P 		451
(0.1)
P 		789
(3)
P 		238.7
(-1.8)
P 		694
C 73.3
(-3)
P 		526.3
(1.2)
P 		284.8
(-1.1)
P 		496
(0.9)
P 		728
(3)
P 		266.9
(-1.2)
P 		655
avr 95.3
(-3) 		540
(1) 		321.6
(-1) 		466.8
(0.3) 		761.8
(3) 		248.2
(-1.6) 		667
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 57.6
(0.6)
P 		88.6
(3)
P 		81
(2.4)
P 		10.4
(-3)
A 		78
B 59.6
(1.1)
P 		86.2
(3)
P 		81.7
(2.7)
P 		3.4
(-3)
A 		83
C 66.8
(-0)
P 		98.6
(1.5)
P 		128.1
(3)
P 		6.1
(-3)
A 		122
avr 61.3
(0.6) 		91.1
(2.6) 		96.9
(3) 		6.6
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 21.7
(-3)
P 		186.8
(1.7)
P 		78.2
(-1.4)
P 		115
(-0.3)
P 		231.9
(3)
P 		58.2
(-2)
P 		210
B 33
(-3)
P 		189.2
(0.3)
P 		77.9
(-2.1)
P 		119.4
(-1.2)
P 		320.5
(3)
P 		89
(-1.8)
P 		288
C 27.2
(-3)
P 		160.6
(0.8)
P 		72.5
(-1.7)
P 		99.7
(-0.9)
P 		235.6
(3)
P 		89.3
(-1.2)
P 		208
avr 27.3
(-3) 		178.9
(0.9) 		76.2
(-1.8) 		111.4
(-0.9) 		262.7
(3) 		78.8
(-1.7) 		235
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186337_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5226
Sequence Type Exemplar sequence
Representative Public ID F43C11.3 NCBI
Target Description F43C11.3 /REP_DB=WormBase Gene ID /WP=CE20783 /TR=Q9U5B5 /GB=AAF16611.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061850 NCBI Caenorhabditis elegans F43C11.3 (F43C11.3) mRNA, complete cds. 11/11 None
SNAP00000012998 ENSEMBL cdna:SNAP chromosome:CEL140:II:2353339:2354339:1 11/11 None
GENEFINDER00000013014 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2353339:2354339:1 11/11 None
F43C11.3 ENSEMBL cdna:known chromosome:CEL140:II:2353339:2354339:1 gene:F43C11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012999 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2353337-2354338(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C11.3
Entrez Gene 185697 Entrez gene
SwissProt Q9U5B5 EMBL-EBI
WormBase CE20783 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF16611 Hypothetical protein F43C11.3 [Caenorhabditis elegans] ref|NP_494251.1| F43C11.3 [Caenorhabditis elegans] 1.0E-64
blast CAA80147 Hypothetical protein ZK512.7 [Caenorhabditis elegans] ref|NP_499024.1| ZK512.7 [Caenorhabditis elegans] sp|P34645|YOQ7_CAEEL Hypothetical protein ZK512.7 in chromosome III 6.0E-46
blast CAE62657 Hypothetical protein CBG06795 [Caenorhabditis briggsae] emb|CAE62655.1| Hypothetical protein CBG06793 [Caenorhabditis briggsae] 4.0E-39
Sequence
Target Sequence 
>C. ELEGANS:186337_AT
tttttctattcttatctcctatatttcttcacaagcaattccaaatgtggtcttgactgg
agaacccagagttattgcaaggaggatacttaatgtagatatgaaaaccgctcaacaact
ggttcatcccgataaccaaatgcacgttaaatatcaagtaaacgttgtgaaaaacccaga
aaacctagctaccgaatcctccggctacatcactgaagaacggactccagtgactatcta
tcgcagaattctcagaccagcacggatcacattcaatgaggatagagtagttacagataa
cgttcaaggaactagtgatgctgttgaaatggagtcatggacattgaataagagccctac
tattgatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCTATTCTTATCTCCTATATT 484 675 30 Antisense
TATCTCCTATATTTCTTCACAAGCA 497 659 42 Antisense
ATGTGGTCTTGACTGGAGAACCCAG 132 51 74 Antisense
AACCGCTCAACAACTGGTTCATCCC 158 147 135 Antisense
CATCCCGATAACCAAATGCACGTTA 262 201 154 Antisense
CAGAAAACCTAGCTACCGAATCCTC 78 203 206 Antisense
CCTCCGGCTACATCACTGAAGAACG 242 265 227 Antisense
CGGACTCCAGTGACTATCTATCGCA 372 243 250 Antisense
ATCGCAGAATTCTCAGACCAGCACG 114 37 269 Antisense
AGACCAGCACGGATCACATTCAATG 115 71 283 Antisense
GAATAAGAGCCCTACTATTGATGGA 274 327 375 Antisense
Sequence Source Affymetrix Proprietary Database