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[186336_at]

Description Y38H6C.15 /REP_DB=WormBase Gene ID /WP=CE19109 /TR=Q9XX46 /GB=CAA20993.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 7.3
(-3)
A 		44.4
(3)
A 		30.1
(0.7)
A 		17.7
(-1.3)
A 		37
B 11.9
(-1.8)
A 		37.5
(3)
A 		8.8
(-2.3)
A 		5.2
(-3)
A 		32
C 23.3
(-3)
A 		49.6
(1.7)
A 		27.6
(-2.2)
A 		57.1
(3)
A 		34
avr 14.2
(-3) 		43.8
(3) 		22.2
(-1.4) 		26.7
(-0.5) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 16.6
(-3)
A 		62.5
(-1.4)
A 		37.7
(-2.2)
A 		30.4
(-2.5)
A 		46.5
(-1.9)
A 		185.3
(3)
A 		169
B 45
(-0.9)
A 		8.1
(-3)
A 		33.7
(-1.5)
A 		13.3
(-2.7)
A 		34.5
(-1.5)
A 		113.6
(3)
A 		106
C 23.7
(-2.3)
A 		29
(-2.1)
A 		4.8
(-3)
A 		31.1
(-2)
A 		66.5
(-0.7)
A 		168.7
(3)
A 		164
avr 28.4
(-2.8) 		33.2
(-2.6) 		25.4
(-3) 		24.9
(-3) 		49.2
(-1.9) 		155.9
(3) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.7
(-2.9)
A 		9.6
(3)
A 		7.9
(1.5)
A 		2.6
(-3)
A 		7
B 3.8
(-1)
A 		9.3
(3)
A 		2
(-2.3)
A 		1.1
(-3)
A 		8
C 7.7
(-3)
A 		14.3
(3)
A 		9.6
(-1.3)
A 		9.6
(-1.3)
A 		7
avr 4.7
(-2.7) 		11.1
(3) 		6.5
(-1.1) 		4.4
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 3.1
(-3)
A 		22.2
(-0.3)
A 		8.2
(-2.3)
A 		7.7
(-2.3)
A 		14
(-1.4)
A 		45.1
(3)
A 		42
B 15.7
(-1)
A 		2.7
(-3)
A 		8.2
(-2.2)
A 		3.5
(-2.9)
A 		14
(-1.3)
A 		42.4
(3)
A 		40
C 8.8
(-2.2)
A 		8.8
(-2.2)
A 		1.2
(-3)
A 		6.3
(-2.4)
A 		21.5
(-0.8)
A 		56.5
(3)
A 		55
avr 9.2
(-2.5) 		11.2
(-2.2) 		5.9
(-3) 		5.8
(-3) 		16.5
(-1.5) 		48
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186336_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13879
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.15 NCBI
Target Description Y38H6C.15 /REP_DB=WormBase Gene ID /WP=CE19109 /TR=Q9XX46 /GB=CAA20993.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075557(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075557 NCBI Caenorhabditis elegans Y38H6C.15 (Y38H6C.15) mRNA, complete cds. 11/11 None
SNAP00000041327 ENSEMBL cdna:SNAP chromosome:CEL140:V:20528074:20534275:-1 10/11 None
GENEFINDER00000041355 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20532852:20534275:-1 11/11 None
Y38H6C.15 ENSEMBL cdna:known chromosome:CEL140:V:20532852:20534275:-1 gene:Y38H6C.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20532851-20534275(-) 93.19 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38H6C.15
Entrez Gene 189696 Entrez gene
SwissProt Q9XX46 EMBL-EBI
WormBase CE19109 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20992 Hypothetical protein Y38H6C.14 [Caenorhabditis elegans] ref|NP_507957.1| Y38H6C.14 [Caenorhabditis elegans] 0.0
blast CAE61668 Hypothetical protein CBG05607 [Caenorhabditis briggsae] 0.0
blast CAA20993 Hypothetical protein Y38H6C.15 [Caenorhabditis elegans] ref|NP_507958.1| Y38H6C.15 [Caenorhabditis elegans] 4.0E-51
blast CAA20993 Hypothetical protein Y38H6C.15 [Caenorhabditis elegans] ref|NP_507958.1| Y38H6C.15 [Caenorhabditis elegans] 2.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507958.1 1 4-23
Y38H6C.15 1 4-23
SNAP00000041327 2 4-23,147-169
GENEFINDER00000041355 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:186336_AT
gatgttcatctcgatcactttttcaattggatttcttattatgatttgtgccggcaaaaa
gaagcaaaagtcaacaaagcctgtggttgaatcaacctcggcttcaagttctgtcaaaaa
tggtgccaatgctgctccagactgcccagttccaccaccggggcttagatcagtcggcaa
ggacactcaggacccgaatatgccgccaaacaaggaagacaagaaaccagagtccaaaaa
gtcagcggaaaagctttcgaaaaaatcggacaaaaccaagaaaaagacgacagtatcgag
tgaggataagcctgaaaaaccggaaaaattgaccgaagaggagaagccgaaggaaaagga
aaaagcgaaggagaagactgttccagttcaatcgaagcttcgcgagggcgacaagaacgc
ggttgtcacagatcctattgtcacacctgaaacggacgagtaccccacacttgaagagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTCATCTCGATCACTTTTTCA 127 411 30 Antisense
GATTTCTTATTATGATTTGTGCCGG 456 425 59 Antisense
TGAATCAACCTCGGCTTCAAGTTCT 483 573 117 Antisense
AAAATGGTGCCAATGCTGCTCCAGA 219 133 146 Antisense
ACCACCGGGGCTTAGATCAGTCGGC 309 75 183 Antisense
CAGTCGGCAAGGACACTCAGGACCC 483 207 200 Antisense
GACCCGAATATGCCGCCAAACAAGG 127 383 220 Antisense
GTTCCAGTTCAATCGAAGCTTCGCG 279 441 409 Antisense
AGAACGCGGTTGTCACAGATCCTAT 452 73 443 Antisense
GATCCTATTGTCACACCTGAAACGG 655 413 460 Antisense
ACGAGTACCCCACACTTGAAGAGGA 599 1 485 Antisense
Sequence Source Affymetrix Proprietary Database