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[186335_at]

Description Y51H7C.3 /REP_DB=WormBase Gene ID /WP=CE25385 /TR=Q9N3I5 /GB=AAK39334.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 10      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 78.2
(-2.4)
P 		61.3
(-3)
A 		97.7
(-1.7)
A 		231.1
(3)
P 		170
B 82.1
(-3)
P 		106.8
(-2.2)
A 		92.9
(-2.6)
A 		263.2
(3)
P 		181
C 106.5
(-2.2)
P 		121
(-1.7)
M 		84.4
(-3)
A 		248.5
(3)
P 		164
avr 88.9
(-3) 		96.4
(-2.7) 		91.7
(-2.9) 		247.6
(3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 809
1 2 3 4 5 6 range
A 126.9
(-2.6)
P 		90.8
(-3)
P 		132.5
(-2.6)
P 		123.7
(-2.7)
P 		366.7
(-0.1)
P 		661.9
(3)
P 		571
B 82.2
(-2.8)
P 		53.5
(-3)
P 		96.4
(-2.6)
P 		163.5
(-2.1)
P 		464.3
(0.4)
P 		770
(3)
P 		717
C 67.9
(-3)
P 		105.6
(-2.7)
P 		95.4
(-2.8)
P 		144.7
(-2.4)
P 		281.6
(-1.4)
P 		862.5
(3)
P 		795
avr 92.3
(-2.9) 		83.3
(-3) 		108.1
(-2.8) 		144
(-2.5) 		370.9
(-0.5) 		764.8
(3) 		682
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 28.5
(1.4)
P 		13.3
(-3)
A 		25.5
(0.6)
A 		33.8
(3)
P 		21
B 26.2
(-2.2)
P 		26.4
(-2.2)
A 		21.5
(-3)
A 		56.1
(3)
P 		35
C 35.2
(-0.2)
P 		34.8
(-0.4)
M 		29.4
(-3)
A 		41.9
(3)
P 		13
avr 30
(-1.4) 		24.8
(-3) 		25.5
(-2.8) 		43.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 23.4
(-3)
P 		32.3
(-2.6)
P 		28.8
(-2.8)
P 		31.4
(-2.7)
P 		110.6
(0.8)
P 		161.2
(3)
P 		138
B 28.6
(-2.8)
P 		17.8
(-3)
P 		23.4
(-2.9)
P 		43.3
(-2.4)
P 		188.6
(0.8)
P 		287.1
(3)
P 		269
C 25.2
(-3)
P 		32.2
(-2.8)
P 		24.3
(-3)
P 		29.1
(-2.9)
P 		91.1
(-1.5)
P 		288.7
(3)
P 		264
avr 25.7
(-3) 		27.4
(-2.9) 		25.5
(-3) 		34.6
(-2.8) 		130.1
(-0.1) 		245.7
(3) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186335_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4583
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.3 NCBI
Target Description Y51H7C.3 /REP_DB=WormBase Gene ID /WP=CE25385 /TR=Q9N3I5 /GB=AAK39334.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061572 NCBI Caenorhabditis elegans Y51H7C.3 (Y51H7C.3) mRNA, complete cds. 11/11 None
SNAP00000035526 ENSEMBL cdna:SNAP chromosome:CEL140:II:1409065:1439609:1 9/11 None
GENEFINDER00000035548 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1438516:1439609:1 10/11 None
Y51H7C.3 ENSEMBL cdna:known chromosome:CEL140:II:1438503:1439643:1 gene:Y51H7C.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1438514-1439608(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7C.3
Entrez Gene 173521 Entrez gene
SwissProt Q9N3I5 EMBL-EBI
WormBase CE25385 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE70291 Hypothetical protein CBG16811 [Caenorhabditis briggsae] 2.0E-97
blast AAK39344 Hypothetical protein Y51H7C.5 [Caenorhabditis elegans] 8.0E-88
blast AAK39334 Hypothetical protein Y51H7C.3 [Caenorhabditis elegans] ref|NP_493973.1| Y51H7C.3 [Caenorhabditis elegans] 4.0E-59
blast AAK39334 Hypothetical protein Y51H7C.3 [Caenorhabditis elegans] ref|NP_493973.1| Y51H7C.3 [Caenorhabditis elegans] 6.0E-55
blast AAK39334 Hypothetical protein Y51H7C.3 [Caenorhabditis elegans] ref|NP_493973.1| Y51H7C.3 [Caenorhabditis elegans] 2.0E-51
blast CAE62975 Hypothetical protein CBG07193 [Caenorhabditis briggsae] 1.0E-40
blast CAE62975 Hypothetical protein CBG07193 [Caenorhabditis briggsae] 2.0E-36
Sequence
Target Sequence 
>C. ELEGANS:186335_AT
gaagttcctgacatcaattctcggctctgaacgtgatcgtgcagccaaaaagcgtcgaag
tctcgaagtgaacctgcaccgcctcgaagagaaggctttcctcttggaaatggagctcga
agagaccagaagacaaaaagaaaaagtgatcaaagagctccgcaacgggctcccagttcg
ccacgtgtcaacagtcagcgtctcgtcgaccgatatgtccttcaacacggattcctcgaa
tgtcaccgatcattattgtggacttccgatcgattcgagcacgccgaaggagacctctaa
gagagattttcagcaaaaacacgagcaatatgccgaagaagagggggagcgtgcaaaatg
gcaaagctctgcgaaactcggcgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTCCTGACATCAATTCTCGGC 547 337 15 Antisense
AATTCTCGGCTCTGAACGTGATCGT 236 175 30 Antisense
GTGATCGTGCAGCCAAAAAGCGTCG 198 483 47 Antisense
AAGTCTCGAAGTGAACCTGCACCGC 565 157 72 Antisense
ACCTGCACCGCCTCGAAGAGAAGGC 83 89 86 Antisense
ATCAAAGAGCTCCGCAACGGGCTCC 591 25 163 Antisense
TCGTCGACCGATATGTCCTTCAACA 330 603 217 Antisense
CAACACGGATTCCTCGAATGTCACC 606 189 237 Antisense
ACCGATCATTATTGTGGACTTCCGA 207 89 259 Antisense
AGCACGCCGAAGGAGACCTCTAAGA 481 77 292 Antisense
AAAGCTCTGCGAAACTCGGCGAGAA 498 123 377 Antisense
Sequence Source Affymetrix Proprietary Database