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[186334_at] 7TM receptor, sre family

Description Y39C12A.6 /REP_DB=WormBase Gene ID /WP=CE24234 /TR=Q9U2L5 /GB=CAB60491.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 24      6grp_total > 12      4grp_total > 11      6grp_cgc > 52      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 78.7
(-2.1)
A 		61
(-2.5)
A 		40.1
(-3)
A 		287.6
(3)
P 		248
B 92.8
(-1.6)
M 		66.9
(-2.2)
A 		30.1
(-3)
A 		289.9
(3)
P 		260
C 83.9
(-1.6)
M 		76
(-1.8)
A 		33.3
(-3)
A 		252.3
(3)
P 		219
avr 85.1
(-1.7) 		68
(-2.2) 		34.5
(-3) 		276.6
(3) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 93.1
(0.9)
M 		131.4
(3)
P 		111.9
(1.9)
A 		71.7
(-0.3)
P 		79.6
(0.2)
A 		22.3
(-3)
A 		109
B 127
(2.3)
P 		136.8
(3)
P 		93.3
(-0)
M 		75.9
(-1.3)
A 		81.6
(-0.9)
P 		51
(-3)
A 		86
C 83.7
(-1.3)
P 		196.6
(3)
M 		64.6
(-2.1)
P 		127.1
(0.3)
A 		40.1
(-3)
A 		57.6
(-2.3)
P 		157
avr 101.3
(0.1) 		154.9
(3) 		89.9
(-0.5) 		91.6
(-0.4) 		67.1
(-1.7) 		43.6
(-3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 28.6
(0.4)
A 		13.2
(-2.5)
A 		10.5
(-3)
A 		42.1
(3)
P 		32
B 29.6
(-0.5)
M 		16.5
(-2)
A 		7
(-3)
A 		61.8
(3)
P 		55
C 27.8
(0.1)
M 		21.8
(-1)
A 		11.6
(-3)
A 		42.5
(3)
P 		31
avr 28.7
(-0.1) 		17.2
(-1.8) 		9.7
(-3) 		48.8
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 17.2
(-1.3)
M 		46.7
(3)
P 		24.4
(-0.2)
A 		18.2
(-1.1)
P 		24
(-0.3)
A 		5.4
(-3)
A 		41
B 44.2
(2.7)
P 		45.5
(3)
P 		22.7
(-2.2)
M 		20.1
(-2.8)
A 		33.1
(0.2)
P 		19
(-3)
A 		27
C 31
(-0.7)
P 		60
(3)
M 		16.5
(-2.6)
P 		25.6
(-1.4)
A 		13
(-3)
A 		19.3
(-2.2)
P 		47
avr 30.8
(-0.3) 		50.7
(3) 		21.2
(-1.9) 		21.3
(-1.9) 		23.4
(-1.5) 		14.6
(-3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186334_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10015
Sequence Type Exemplar sequence
Representative Public ID Y39C12A.6 NCBI
Target Description Y39C12A.6 /REP_DB=WormBase Gene ID /WP=CE24234 /TR=Q9U2L5 /GB=CAB60491.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069923(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069923 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-19) (sre-19) mRNA, complete cds. 11/11 None
GENEFINDER00000019629 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12237146:12238922:-1 11/11 None
Y39C12A.6 ENSEMBL cdna:known chromosome:CEL140:IV:12237146:12238922:-1 gene:Y39C12A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12237151-12238928(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-19
Ensembl Y39C12A.6
Entrez Gene 189748 Entrez gene
SwissProt Q9U2L5 EMBL-EBI
WormBase CE24234 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60491 Hypothetical protein Y39C12A.6 [Caenorhabditis elegans] ref|NP_502324.1| Serpentine Receptor, class E (epsilon) family member (sre-19) [Caenorhabditis elegans] 0.0
blast CAE62208 Hypothetical protein CBG06258 [Caenorhabditis briggsae] 1.0E-147
blast CAB60488 Hypothetical protein Y39C12A.3 [Caenorhabditis elegans] ref|NP_502321.1| Serpentine Receptor, class E (epsilon) family member (sre-18) [Caenorhabditis elegans] 3.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 4.5E-108
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502324.1 7 20-42,54-76,102-124,137-159,164-186,220-242,252-274
Y39C12A.6 7 20-42,54-76,102-124,137-159,164-186,220-242,252-274
GENEFINDER00000019629 7 20-42,54-76,102-124,137-159,164-186,220-242,252-274
Sequence
Target Sequence 
>C. ELEGANS:186334_AT
gacgtttatctctatgcttacagcttacgtctttaattccacgaatctaatatttgccta
cgtcggtgctcatttcctgctgaacattgtttgttatattgtttcaattatcacgtatag
aataaatcgaaattggtataatgataaccgtgaaaacaaacatgattactctttgggtac
tcggtttcaaatatcggagaacataaaggtttacaaatttttctctcattacctcttcgt
gctcgcatttttcccattcacctgcacagcttgtgcactttttatccaatatgattcatc
tccgcttcatcgagaaatcatgtttgttgtgtttgatctaagcttcacgttactttgtat
tctggcgccataccttatacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTTATCTCTATGCTTACAGCT 510 377 453 Antisense
GCTTACAGCTTACGTCTTTAATTCC 408 305 468 Antisense
AATATTTGCCTACGTCGGTGCTCAT 362 173 501 Antisense
TGCTCATTTCCTGCTGAACATTGTT 337 581 519 Antisense
ATGATTACTCTTTGGGTACTCGGTT 159 45 614 Antisense
TACAAATTTTTCTCTCATTACCTCT 318 643 664 Antisense
CCCATTCACCTGCACAGCTTGTGCA 377 259 705 Antisense
ACAGCTTGTGCACTTTTTATCCAAT 93 109 718 Antisense
GATTCATCTCCGCTTCATCGAGAAA 525 431 745 Antisense
GCTTCACGTTACTTTGTATTCTGGC 498 305 794 Antisense
TATTCTGGCGCCATACCTTATACTA 285 663 810 Antisense
Sequence Source Affymetrix Proprietary Database