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[186333_at]

Description C16C8.11 /REP_DB=WormBase Gene ID /WP=CE08222 /TR=P91050 /GB=AAB37853.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 91.1
(-3)
A 		91.2
(-3)
A 		99.8
(-2.7)
A 		298.4
(3)
P 		207
B 103.2
(-3)
A 		119.6
(-2.4)
A 		115.4
(-2.5)
A 		260.2
(3)
P 		157
C 81.9
(-3)
A 		102.1
(-2.3)
A 		88.3
(-2.8)
M 		264.6
(3)
P 		183
avr 92.1
(-3) 		104.3
(-2.6) 		101.2
(-2.7) 		274.4
(3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 51.4
(-3)
A 		92.4
(-2.2)
A 		143.5
(-1.3)
P 		169.6
(-0.8)
P 		250
(0.6)
P 		378.2
(3)
P 		327
B 14.5
(-3)
A 		79.2
(-1.8)
A 		134
(-0.7)
P 		158.8
(-0.3)
P 		330
(3)
P 		318.3
(2.8)
P 		316
C 52.9
(-3)
A 		94.9
(-2.3)
A 		130.6
(-1.7)
P 		256
(0.4)
P 		255.9
(0.4)
P 		409.3
(3)
P 		356
avr 39.6
(-3) 		88.8
(-2.1) 		136
(-1.2) 		194.8
(-0.2) 		278.6
(1.4) 		368.6
(3) 		329
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 33.2
(0.4)
A 		19.8
(-3)
A 		26.1
(-1.4)
A 		43.7
(3)
P 		24
B 32.9
(-1.7)
A 		29.5
(-2.4)
A 		26.7
(-3)
A 		55.5
(3)
P 		29
C 27.1
(-3)
A 		29.4
(-2.2)
A 		30.8
(-1.7)
M 		44.6
(3)
P 		18
avr 31.1
(-1.6) 		26.2
(-3) 		27.9
(-2.5) 		47.9
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 9.5
(-3)
A 		32.9
(-1.3)
A 		31.3
(-1.4)
P 		43
(-0.6)
P 		75.5
(1.8)
P 		92.1
(3)
P 		83
B 5
(-3)
A 		26.4
(-2)
A 		32.5
(-1.7)
P 		42.1
(-1.3)
P 		134.1
(3)
P 		118.7
(2.3)
P 		129
C 19.6
(-3)
A 		28.9
(-2.5)
A 		33.2
(-2.3)
P 		51.5
(-1.4)
P 		82.8
(0.2)
P 		137
(3)
P 		117
avr 11.4
(-3) 		29.4
(-2) 		32.3
(-1.8) 		45.5
(-1) 		97.5
(1.9) 		115.9
(3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186333_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5222
Sequence Type Exemplar sequence
Representative Public ID C16C8.11 NCBI
Target Description C16C8.11 /REP_DB=WormBase Gene ID /WP=CE08222 /TR=P91050 /GB=AAB37853.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062147 NCBI Caenorhabditis elegans C16C8.11 (C16C8.11) mRNA, complete cds. 11/11 None
SNAP00000014783 ENSEMBL cdna:SNAP chromosome:CEL140:II:3453860:3454606:1 11/11 None
GENEFINDER00000014807 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3453860:3454606:1 11/11 None
C16C8.11 ENSEMBL cdna:known chromosome:CEL140:II:3453759:3454607:1 gene:C16C8.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3453858-3454605(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.11
Entrez Gene 173690 Entrez gene
SwissProt P91050 EMBL-EBI
WormBase CE08222 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37853 Hypothetical protein C16C8.11 [Caenorhabditis elegans] ref|NP_494548.1| C16C8.11 [Caenorhabditis elegans] 1.0E-116
blast AAB37860 Hypothetical protein C16C8.4 [Caenorhabditis elegans] ref|NP_494542.1| C16C8.4 [Caenorhabditis elegans] 8.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 1.5E-13
Sequence
Target Sequence 
>C. ELEGANS:186333_AT
cacatctcaccaaggatttcctctcaagctccgctaagctttcggaaaatcgtgtccttc
aggccacccaggagctttgtggaaaattgacggaaaaacaaaaagttcaggatgatacga
ttaacttgttgctctcggcgctcggccaaatccaggaaaatcaaaataagattttgaatc
aatttgcatcaatgcaaagtcagctggatattgtaaaacgccgtcaggatgcttatgagc
gggatttaatccaacaaaaaccttcagttccggagcaaaaagtcggtgaatcgtcgaaaa
agtctccgagatctgcagaatcagctctgaaatatgtggagacatgcaccaaagttgtag
atctttgtattgccgtttcaatgcctggaaggctcttctccattggagccaataaaatgg
aatccgttgaacagttgaaaatgaaaatcgaatgccaaacgggaattccacgcacaaaat
tttggctcagacttcacggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACATCTCACCAAGGATTTCCTCTC 632 195 80 Antisense
TCTCAAGCTCCGCTAAGCTTTCGGA 502 611 101 Antisense
TCAGGCCACCCAGGAGCTTTGTGGA 633 621 138 Antisense
TACGATTAACTTGTTGCTCTCGGCG 285 647 195 Antisense
GCGCTCGGCCAAATCCAGGAAAATC 30 289 217 Antisense
GTAAAACGCCGTCAGGATGCTTATG 61 461 292 Antisense
AAGTCTCCGAGATCTGCAGAATCAG 523 157 379 Antisense
TGTAGATCTTTGTATTGCCGTTTCA 24 561 435 Antisense
AATGCCTGGAAGGCTCTTCTCCATT 628 165 459 Antisense
ATGCCAAACGGGAATTCCACGCACA 700 35 531 Antisense
AATTTTGGCTCAGACTTCACGGCAA 268 175 557 Antisense
Sequence Source Affymetrix Proprietary Database