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[186332_at]

Description Y71H2B.8 /REP_DB=WormBase Gene ID /WP=CE22943 /TR=Q9N4F6 /GB=AAF36029.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 51      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 36.2
(-3)
A 		55.8
(3)
A 		41.3
(-1.4)
A 		46.2
(0.1)
A 		20
B 24.6
(-3)
A 		72
(3)
A 		52.9
(0.6)
A 		50.2
(0.2)
A 		47
C 69.8
(3)
A 		38.9
(0.1)
A 		39.8
(0.2)
A 		6.1
(-3)
A 		64
avr 43.5
(-0.4) 		55.6
(3) 		44.7
(-0.1) 		34.2
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 44.8
(2.9)
A 		45.4
(3)
A 		40.9
(2.1)
A 		40
(1.9)
A 		16.2
(-3)
A 		39.9
(1.9)
A 		29
B 43.2
(1)
A 		9.1
(-2.9)
A 		38.5
(0.5)
A 		60.8
(3)
A 		25.8
(-1)
A 		8.1
(-3)
A 		53
C 9.3
(-2.5)
A 		5.2
(-2.9)
A 		25.2
(-1)
A 		3.7
(-3)
A 		68.2
(3)
P 		45.7
(0.9)
A 		65
avr 32.4
(1.5) 		19.9
(-3) 		34.9
(2.4) 		34.8
(2.3) 		36.7
(3) 		31.2
(1) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 13.2
(3)
A 		12.1
(2)
A 		10.8
(0.8)
A 		6.8
(-3)
A 		6
B 7.8
(-3)
A 		17.8
(3)
A 		12.3
(-0.3)
A 		10.7
(-1.3)
A 		10
C 23.1
(3)
A 		11.2
(-0.2)
A 		13.9
(0.5)
A 		1
(-3)
A 		22
avr 14.7
(3) 		13.7
(2.3) 		12.3
(1.3) 		6.2
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.3
(-1.2)
A 		16.2
(3)
A 		8.9
(-0.9)
A 		10.1
(-0.2)
A 		4.9
(-3)
A 		9.7
(-0.5)
A 		11
B 15
(2.5)
A 		3
(-3)
A 		9.4
(-0.1)
A 		16.1
(3)
A 		10.5
(0.4)
A 		3
(-3)
A 		13
C 3.5
(-2.2)
A 		1.6
(-2.7)
A 		6.4
(-1.4)
A 		0.7
(-3)
A 		22.1
(3)
P 		15.3
(1.1)
A 		21
avr 8.9
(-0.9) 		6.9
(-3) 		8.2
(-1.6) 		9
(-0.8) 		12.5
(3) 		9.3
(-0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186332_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6111
Sequence Type Exemplar sequence
Representative Public ID Y71H2B.8 NCBI
Target Description Y71H2B.8 /REP_DB=WormBase Gene ID /WP=CE22943 /TR=Q9N4F6 /GB=AAF36029.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065182(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065182 NCBI Caenorhabditis elegans Y71H2B.8 (Y71H2B.8) mRNA, complete cds. 11/11 None
GENEFINDER00000014047 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2579303:2582979:1 10/11 None
Y71H2B.8 ENSEMBL cdna:known chromosome:CEL140:III:2579303:2580653:1 gene:Y71H2B.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2579302-2580653(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71H2B.8
Entrez Gene 190618 Entrez gene
SwissProt Q9N4F6 EMBL-EBI
WormBase CE22943 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36029 Hypothetical protein Y71H2B.8 [Caenorhabditis elegans] ref|NP_497583.1| Y71H2B.8 [Caenorhabditis elegans] 1.0E-148
blast AAF36029 Hypothetical protein Y71H2B.8 [Caenorhabditis elegans] ref|NP_497583.1| Y71H2B.8 [Caenorhabditis elegans] 1.0E-108
blast CAE56855 Hypothetical protein CBG24683 [Caenorhabditis briggsae] 1.0E-30
blast CAE56855 Hypothetical protein CBG24683 [Caenorhabditis briggsae] 1.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000014047 1 307-329
Sequence
Target Sequence 
>C. ELEGANS:186332_AT
ggatggttccgcaaatttttcgaattatcgattccagtcaagaagttctcgaaaaatcgc
taattccggttgccgaatcattttgtaaaaaaatggcttcagtaagtttaattttttttt
ctcgaaaaattgagaacaaattaatagtgaaatcaatttttaaaaaaaccgagaaattta
cagtaaccagaaaaactgaagcagaagaaataaattttctaattaaagttgttctgaaaa
ttctacgccaccgaattgaaatctcatcatcggaaagtgtgaccgacaaatacataaaga
ccgctttcaatcttattaacaatagtcctaagctccaagtgttaagcttacatgtcaata
atttatctgaaagacatttgctcgacgttttgaatcgactgaagttgcaagaaaatggga
aggatacgctaagtctcagcttgaactccagcaccgagctcacttcgagatttatcagtg
aggttctgaaaacgggattgccgaatctcaatattctcgtcaaagcaccgcatccgggag
aagcccttgttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGGTTCCGCAAATTTTTCGAAT 178 507 263 Antisense
AATCGCTAATTCCGGTTGCCGAATC 15 167 317 Antisense
TACGCCACCGAATTGAAATCTCATC 199 649 506 Antisense
GACCGCTTTCAATCTTATTAACAAT 554 381 561 Antisense
CAATAGTCCTAAGCTCCAAGTGTTA 414 179 582 Antisense
GAAAGACATTTGCTCGACGTTTTGA 253 359 631 Antisense
TAAGTCTCAGCTTGAACTCCAGCAC 388 637 692 Antisense
AGCACCGAGCTCACTTCGAGATTTA 492 75 712 Antisense
GAAAACGGGATTGCCGAATCTCAAT 470 351 750 Antisense
AATATTCTCGTCAAAGCACCGCATC 73 175 772 Antisense
GCATCCGGGAGAAGCCCTTGTTGTT 162 299 792 Antisense
Sequence Source Affymetrix Proprietary Database