[Home] | [Total List]

[186331_at]

Description F56D12.2 /REP_DB=WormBase Gene ID /WP=CE11248 /TR=O16643 /GB=AAB66117.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 19      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 24.2
(-3)
A 		27.1
(-2.6)
A 		24.2
(-3)
A 		72.6
(3)
A 		48
B 27
(-0.1)
A 		46.4
(3)
A 		8.3
(-3)
A 		19.6
(-1.2)
A 		38
C 4.3
(-2.9)
A 		29.7
(-1.2)
A 		2.4
(-3)
A 		95.7
(3)
P 		93
avr 18.5
(-2.2) 		34.4
(-0.3) 		11.6
(-3) 		62.6
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 42.3
(3)
A 		17.9
(-3)
A 		31.5
(0.3)
A 		36.7
(1.6)
A 		34.4
(1.1)
A 		40.9
(2.7)
A 		24
B 28.6
(1.7)
A 		9.2
(-2)
A 		4.1
(-3)
A 		35.6
(3)
P 		17.2
(-0.5)
A 		6.5
(-2.5)
A 		32
C 31.1
(1.1)
A 		32.2
(1.2)
A 		44.4
(3)
A 		24.9
(0.2)
A 		5.7
(-2.6)
A 		3.1
(-3)
A 		41
avr 34
(3) 		19.8
(-2) 		26.7
(0.5) 		32.4
(2.4) 		19.1
(-2.2) 		16.8
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 8.8
(0.7)
A 		5.9
(-3)
A 		6.3
(-2.5)
A 		10.6
(3)
A 		5
B 8.6
(1.2)
A 		11.4
(3)
A 		1.9
(-3)
A 		4.2
(-1.5)
A 		10
C 1.4
(-2.8)
A 		8.5
(0)
A 		0.8
(-3)
A 		16.1
(3)
P 		15
avr 6.3
(-0.3) 		8.6
(1.6) 		3
(-3) 		10.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.8
(-0.9)
A 		6.4
(-3)
A 		6.9
(-2.3)
A 		9.3
(1.4)
A 		10.4
(3)
A 		10
(2.4)
A 		4
B 10
(3)
A 		3.1
(-1.6)
A 		1
(-3)
A 		9.4
(2.6)
P 		7
(1)
A 		2.4
(-2.1)
A 		9
C 11.5
(3)
A 		9.8
(2)
A 		11.3
(2.9)
A 		5
(-0.7)
A 		1.8
(-2.5)
A 		1
(-3)
A 		11
avr 9.8
(3) 		6.4
(-0.8) 		6.4
(-0.8) 		7.9
(0.8) 		6.4
(-0.8) 		4.5
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186331_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5914
Sequence Type Exemplar sequence
Representative Public ID F56D12.2 NCBI
Target Description F56D12.2 /REP_DB=WormBase Gene ID /WP=CE11248 /TR=O16643 /GB=AAB66117.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061549
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F56D12.4 ENSEMBL cdna:known chromosome:CEL140:II:1327001:1350118:1 gene:F56D12.4 A 
NM_061549 NCBI Caenorhabditis elegans JNK Interacting Protein (scaffold protein) family member (jip-1) (jip-1) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1345379-1346355(+) 99.38 100.0
Public Domain and Genome References
Gene Title
Gene Symbol jip-1
Ensembl F56D12.4
Entrez Gene 173513 Entrez gene
SwissProt O16643 EMBL-EBI
WormBase CE37024 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66117 Jnk interacting protein (scaffold protein) protein 1 [Caenorhabditis elegans] ref|NP_493950.2| JNK Interacting Protein (scaffold protein) family member (jip-1) [Caenorhabditis elegans] 0.0
blast C88042 protein F56D12.4 [imported] - Caenorhabditis elegans 0.0
blast CAE62912 Hypothetical protein CBG07104 [Caenorhabditis briggsae] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 7.0E-19
Sequence
Target Sequence 
>C. ELEGANS:186331_AT
aattcgtattcagcacatttttctaccttgaaaaccacttttccagcaattttaaagatt
ttctgcattttgtcgtgaggtgctcgttttccctgtcaaactttcgaaaattggattttt
ccgatttttcttcattttttgcgcgttttcataccccgagaatcactttttacgcaaatt
tgaagtttttctgcattttgtccgttgggggcttctcaagcgtggaaaatggcaaaaaat
ctggtttttgtagtgaaaaaatgtctaattctagtaaatatatattccaatcggtactcc
catcccctacaccatcatcatccggccgtcgtcttccagcccttccaatcaactcagccg
ccctgctccgccgtattccgatggcttcaatacctccaaaccccccgcaaaaacatcagg
accat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCGTATTCAGCACATTTTTCTA 315 177 92 Antisense
TACCTTGAAAACCACTTTTCCAGCA 30 651 115 Antisense
AAGATTTTCTGCATTTTGTCGTGAG 686 155 146 Antisense
TTTTGTCGTGAGGTGCTCGTTTTCC 634 677 159 Antisense
TCATTTTTTGCGCGTTTTCATACCC 47 619 223 Antisense
TACCCCGAGAATCACTTTTTACGCA 340 647 243 Antisense
GAAGTTTTTCTGCATTTTGTCCGTT 176 335 273 Antisense
GTTGGGGGCTTCTCAAGCGTGGAAA 502 435 295 Antisense
ATATATTCCAATCGGTACTCCCATC 625 19 371 Antisense
ATTCCGATGGCTTCAATACCTCCAA 462 7 466 Antisense
CCCCCCGCAAAAACATCAGGACCAT 433 257 492 Antisense
Sequence Source Affymetrix Proprietary Database