[Home] | [Total List]

[186330_at]

Description W06E11.5 /REP_DB=WormBase Gene ID /WP=CE26024 /TR=Q23203 /GB=AAK29864.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 19.6
(-1.6)
A 		10.1
(-3)
A 		49.9
(3)
A 		23.5
(-1)
A 		40
B 24.3
(3)
A 		18.4
(0.1)
A 		12.2
(-3)
A 		13.6
(-2.3)
A 		12
C 51.9
(3)
A 		14.1
(-2.8)
A 		12.6
(-3)
A 		14.9
(-2.6)
A 		39
avr 31.9
(3) 		14.2
(-3) 		24.9
(0.6) 		17.3
(-1.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 12.8
(1)
A 		13.9
(1.6)
A 		15.1
(2.3)
A 		8.4
(-1.6)
A 		6
(-3)
A 		16.3
(3)
A 		10
B 15.3
(3)
A 		10.2
(-0.3)
A 		15.2
(2.9)
A 		9.4
(-0.8)
A 		7
(-2.3)
A 		5.9
(-3)
A 		9
C 9.9
(-1.6)
A 		14.6
(-0.4)
A 		27.5
(3)
A 		13.4
(-0.7)
A 		20.6
(1.2)
A 		4.6
(-3)
A 		23
avr 12.7
(-0.8) 		12.9
(-0.7) 		19.3
(3) 		10.4
(-2.1) 		11.2
(-1.7) 		8.9
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.1
(-0.3)
A 		2.2
(-3)
A 		13
(3)
A 		3.4
(-2.3)
A 		11
B 7.8
(3)
A 		4.5
(-1)
A 		2.8
(-3)
A 		2.9
(-2.9)
A 		5
C 17.2
(3)
A 		4.1
(-2.3)
A 		4.4
(-2.2)
A 		2.5
(-3)
A 		15
avr 10.7
(3) 		3.6
(-2.5) 		6.7
(-0.1) 		2.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.4
(-1.9)
A 		5
(3)
A 		3.3
(-0.2)
A 		2.1
(-2.4)
A 		1.8
(-3)
A 		4
(1.1)
A 		3
B 5.3
(3)
A 		3.4
(-0.7)
A 		3.7
(-0.1)
A 		2.5
(-2.4)
A 		2.8
(-1.8)
A 		2.2
(-3)
A 		3
C 3.7
(-0.6)
A 		4.5
(0.3)
A 		7
(3)
A 		2.7
(-1.7)
A 		6.7
(2.7)
A 		1.5
(-3)
A 		6
avr 3.8
(0.7) 		4.3
(2) 		4.7
(3) 		2.4
(-3) 		3.8
(0.7) 		2.6
(-2.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186330_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8105
Sequence Type Exemplar sequence
Representative Public ID W06E11.5 NCBI
Target Description W06E11.5 /REP_DB=WormBase Gene ID /WP=CE26024 /TR=Q23203 /GB=AAK29864.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064826(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064826 NCBI Caenorhabditis elegans W06E11.5a (W06E11.5) mRNA, complete cds. 11/11 None
SNAP00000038890 ENSEMBL cdna:SNAP chromosome:CEL140:III:639154:640207:-1 11/11 None
GENEFINDER00000038901 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:639154:640207:-1 11/11 None
W06E11.5a ENSEMBL cdna:known chromosome:CEL140:III:639087:640210:-1 gene:W06E11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027633 8/11 Cross Hyb Matching Probes None
W06E11.5b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175219 2 1 NM_064826 186330_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:639153-640207(-) 100.0 100.0
Public Domain and Genome References
Ensembl W06E11.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29864 Hypothetical protein W06E11.5a [Caenorhabditis elegans] ref|NP_497227.1| W06E11.5a [Caenorhabditis elegans] gb|AAF63761.1| cysteine-rich hydrophobic protein [Caenorhabditis elegans] 1.0E-102
blast CAE69211 Hypothetical protein CBG15251 [Caenorhabditis briggsae] 2.0E-90
blast AAN65283 Hypothetical protein W06E11.5b [Caenorhabditis elegans] ref|NP_001022804.1| W06E11.5b [Caenorhabditis elegans] 1.0E-67
Sequence
Target Sequence 
>C. ELEGANS:186330_AT
gcgtcggtttccagtgacggcgaagagccagaaatagacgtgatgccgagtagtgacgag
gaatccgagccaatatacattccaaaggagaaggaacccgtcgtgattcgtggagttgga
aatatcacagtatttggcatgaattcccgtttcaacacggaatatccgcccgaactaacc
ggatatattgctccagaagaactctcggcgacactgtctcgcgtaaattctgtgctcaaa
cgccacgtacaaacgtcatcgcgctggcttttatgtggattagcgttttgctgttgctca
attggatgctcaatgtggccggtgttatgtctgaatcggaggaccgtcttagcgctggaa
aaatgtctggaccacgagaatgttagcctttatcacaaattgggcctccactggtccctg
gctcggcgcccaacggagccctcagaccgcctgaccgaatatgtgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTCGGTTTCCAGTGACGGCGAAG 486 287 40 Antisense
GAACCCGTCGTGATTCGTGGAGTTG 421 345 133 Antisense
AGAAGAACTCTCGGCGACACTGTCT 17 75 234 Antisense
ACTGTCTCGCGTAAATTCTGTGCTC 573 97 252 Antisense
TTCTGTGCTCAAACGCCACGTACAA 287 693 267 Antisense
TCATCGCGCTGGCTTTTATGTGGAT 692 621 295 Antisense
GGATTAGCGTTTTGCTGTTGCTCAA 184 509 316 Antisense
TGCTCAATGTGGCCGGTGTTATGTC 288 559 346 Antisense
GAATCGGAGGACCGTCTTAGCGCTG 513 329 372 Antisense
TATCACAAATTGGGCCTCCACTGGT 432 657 430 Antisense
AGACCGCCTGACCGAATATGTGCTC 135 71 483 Antisense
Sequence Source Affymetrix Proprietary Database