[Home] | [Total List]

[186329_at]

Description Y57G7A.3 /REP_DB=WormBase Gene ID /WP=CE19632 /TR=O76624 /GB=AAC26298.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 107.1
(3)
A 		52.7
(-3)
A 		105.6
(2.8)
A 		87.6
(0.8)
A 		54
B 97.4
(0)
A 		47.2
(-3)
A 		147.3
(3)
A 		128.4
(1.9)
A 		100
C 177.1
(3)
P 		157.3
(1.6)
A 		93.8
(-3)
A 		162.6
(2)
P 		83
avr 127.2
(3) 		85.7
(-3) 		115.6
(1.3) 		126.2
(2.9) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 82.1
(-0.4)
A 		115.6
(3)
A 		83.2
(-0.3)
M 		56.3
(-3)
A 		62.4
(-2.4)
A 		107.1
(2.1)
A 		59
B 108.4
(3)
P 		48.9
(-0.8)
A 		69.3
(0.5)
P 		14
(-3)
A 		80.6
(1.2)
A 		76.5
(1)
A 		94
C 67.8
(-0.5)
A 		85.2
(0.9)
P 		61.3
(-1)
A 		35.2
(-3)
A 		112.4
(3)
A 		72.4
(-0.1)
A 		77
avr 86.1
(3) 		83.2
(2.7) 		71.3
(1.3) 		35.2
(-3) 		85.1
(2.9) 		85.3
(2.9) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 39
(3)
A 		11.4
(-3)
A 		27.6
(0.5)
A 		12.8
(-2.7)
A 		28
B 31.1
(2.2)
A 		11.7
(-3)
A 		34.1
(3)
A 		27.4
(1.2)
A 		22
C 58.6
(3)
P 		45.2
(0.4)
A 		32.7
(-2)
A 		27.4
(-3)
P 		31
avr 42.9
(3) 		22.8
(-2.9) 		31.5
(-0.4) 		22.5
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 15.1
(-2.8)
A 		41.1
(3)
A 		18.1
(-2.1)
M 		14.3
(-3)
A 		18.8
(-2)
A 		26.1
(-0.4)
A 		27
B 37.7
(3)
P 		16.3
(-0.8)
A 		16.8
(-0.7)
P 		3.7
(-3)
A 		32.8
(2.1)
A 		28.5
(1.4)
A 		34
C 25.1
(0.7)
A 		26
(0.9)
P 		15.6
(-1.3)
A 		7.1
(-3)
A 		36.4
(3)
A 		24.2
(0.5)
A 		29
avr 26
(2.1) 		27.8
(2.6) 		16.8
(-0.6) 		8.4
(-3) 		29.3
(3) 		26.3
(2.1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186329_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5230
Sequence Type Exemplar sequence
Representative Public ID Y57G7A.3 NCBI
Target Description Y57G7A.3 /REP_DB=WormBase Gene ID /WP=CE19632 /TR=O76624 /GB=AAC26298.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027313(11), NM_001027314(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027313 NCBI Caenorhabditis elegans Y57G7A.3a (Y57G7A.3) mRNA, complete cds. 11/11 None
NM_001027314 NCBI Caenorhabditis elegans Y57G7A.3b (Y57G7A.3) mRNA, complete cds. 10/11 None
SNAP00000014154 ENSEMBL cdna:SNAP chromosome:CEL140:II:1285809:1288011:1 11/11 None
GENEFINDER00000014169 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1285908:1286693:1 10/11 None
Y57G7A.3b ENSEMBL cdna:known chromosome:CEL140:II:1285809:1286313:1 gene:Y57G7A.3 10/11 None
Y57G7A.3a ENSEMBL cdna:known chromosome:CEL140:II:1285809:1286339:1 gene:Y57G7A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1285807-1286338(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y57G7A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26298 Hypothetical protein Y57G7A.3a [Caenorhabditis elegans] ref|NP_001022484.1| Y57G7A.3a [Caenorhabditis elegans] 6.0E-46
blast AAC26298 Hypothetical protein Y57G7A.3a [Caenorhabditis elegans] ref|NP_001022484.1| Y57G7A.3a [Caenorhabditis elegans] 7.0E-46
blast AAC26298 Hypothetical protein Y57G7A.3a [Caenorhabditis elegans] ref|NP_001022484.1| Y57G7A.3a [Caenorhabditis elegans] 4.0E-40
blast CAB07559 Hypothetical protein C06C6.8 [Caenorhabditis elegans] ref|NP_507014.1| C06C6.8 [Caenorhabditis elegans] 3.0E-33
blast CAB07560 Hypothetical protein C06C6.9 [Caenorhabditis elegans] ref|NP_507013.1| C06C6.9 [Caenorhabditis elegans] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR009564 EMBL-EBI Protein of unknown function DUF1179 8.1E-88
Pfam IPR009564 EMBL-EBI Protein of unknown function DUF1179 2.0E-76
Pfam IPR009564 EMBL-EBI Protein of unknown function DUF1179 4.8E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022484.1 1 4-26
NP_001022485.1 1 4-26
Y57G7A.3b 1 4-26
Y57G7A.3a 1 4-26
SNAP00000014154 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:186329_AT
tcaagagcatttccctctatttcggaccattttttttgctgatcgtctcgattgcccagt
gtcagtcaaaaaagaagtttagagacgatgaaagagccgatctagtcccccaaaatgcgc
cagtttgcccaaaccctattaagaaatcgtccacgcagacttgcccgactgcacagaccc
cgccggcaaaaactccaattgaaaggagcagacatgaagctgaagacactcttgcaaatg
tgaaatcgttgccaccagaggagtcggacgatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGAGCATTTCCCTCTATTTCGG 209 631 35 Antisense
TCTCGATTGCCCAGTGTCAGTCAAA 538 611 80 Antisense
GACGATGAAAGAGCCGATCTAGTCC 61 379 118 Antisense
GCCAGTTTGCCCAAACCCTATTAAG 423 269 153 Antisense
ACCCTATTAAGAAATCGTCCACGCA 316 89 167 Antisense
AAGAAATCGTCCACGCAGACTTGCC 407 153 175 Antisense
CGCCGGCAAAAACTCCAATTGAAAG 116 257 215 Antisense
GACATGAAGCTGAAGACACTCTTGC 220 369 245 Antisense
GCAAATGTGAAATCGTTGCCACCAG 91 319 268 Antisense
AATCGTTGCCACCAGAGGAGTCGGA 355 167 278 Antisense
TGCCACCAGAGGAGTCGGACGATGC 685 585 284 Antisense
Sequence Source Affymetrix Proprietary Database