[Home] | [Total List]

[186327_at]

Description Y62H9A.13 /REP_DB=WormBase Gene ID /WP=CE19249 /TR=Q9XWS7 /GB=CAA21568.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 137.6
(3)
A 		15.1
(-2.6)
A 		7.3
(-3)
A 		85.1
(0.6)
A 		130
B 134
(3)
A 		10.3
(-3)
A 		67.3
(-0.2)
A 		91.5
(0.9)
A 		124
C 145.4
(3)
A 		20.2
(-3)
A 		36
(-2.2)
A 		131.3
(2.3)
A 		125
avr 139
(3) 		15.2
(-3) 		36.9
(-1.9) 		102.6
(1.2) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 87.2
(-0.3)
A 		121.6
(1.9)
A 		102.9
(0.7)
A 		87.8
(-0.3)
A 		138.3
(3)
A 		46.4
(-3)
A 		92
B 108.2
(3)
A 		92
(1.2)
A 		54.5
(-3)
A 		83.7
(0.3)
A 		65.7
(-1.7)
A 		83.8
(0.3)
A 		54
C 108.5
(3)
A 		96.8
(1.8)
A 		79.5
(-0)
A 		95
(1.6)
A 		50.8
(-3)
A 		71.7
(-0.8)
A 		58
avr 101.3
(2.6) 		103.5
(3) 		79
(-1.1) 		88.8
(0.6) 		84.9
(-0.1) 		67.3
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 50.1
(3)
A 		3.3
(-2.8)
A 		1.9
(-3)
A 		12.5
(-1.7)
A 		48
B 42.7
(3)
A 		2.5
(-3)
A 		15.6
(-1)
A 		19.5
(-0.5)
A 		40
C 48.1
(3)
A 		5.8
(-3)
A 		12.5
(-2)
A 		22.1
(-0.7)
A 		42
avr 47
(3) 		3.9
(-3) 		10
(-2.2) 		18
(-1) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 16.1
(-2.1)
A 		43.2
(3)
A 		22.4
(-0.9)
A 		22.3
(-0.9)
A 		41.7
(2.7)
A 		11.3
(-3)
A 		32
B 37.6
(3)
A 		30.6
(1.3)
A 		13.2
(-3)
A 		22.2
(-0.8)
A 		26.7
(0.3)
A 		31.3
(1.5)
A 		24
C 40.2
(3)
A 		29.5
(0.3)
A 		20.2
(-2)
A 		19.1
(-2.3)
A 		16.4
(-3)
A 		24
(-1.1)
A 		24
avr 31.3
(1.8) 		34.4
(3) 		18.6
(-3) 		21.2
(-2) 		28.3
(0.7) 		22.2
(-1.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186327_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16007
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.13 NCBI
Target Description Y62H9A.13 /REP_DB=WormBase Gene ID /WP=CE19249 /TR=Q9XWS7 /GB=CAA21568.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077593 NCBI Caenorhabditis elegans Y62H9A.13 (Y62H9A.13) mRNA, complete cds. 11/11 None
GENEFINDER00000025466 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11916926:11920079:1 11/11 None
Y62H9A.13 ENSEMBL cdna:known chromosome:CEL140:X:11916926:11920079:1 gene:Y62H9A.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025465 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11916925-11920079(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.13
Entrez Gene 190468 Entrez gene
SwissProt Q9XWS7 EMBL-EBI
WormBase CE19249 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21568 Hypothetical protein Y62H9A.13 [Caenorhabditis elegans] ref|NP_509994.1| Y62H9A.13 [Caenorhabditis elegans] 1.0E-167
Sequence
Target Sequence 
>C. ELEGANS:186327_AT
gaatcagcccatgccaactgaatcaaacaatcaaactcaaagtgatgatggtgaaacaac
tggtgaacaaaaagacgtcaaaatagaatcgttatcagaatcatgtggaaatgtgctgtc
atcaaactacgatgaaattaatgaagttccacgtttctccgataatccagtttttggaca
tctgaatcttccggaagtgacgatctatgacgctgtttttcattcgttgtcgaatgttca
aaccaccgagagctacacacttccaagagaacttagaacatggccaggaggaagaattgg
atatgctctctcaaaaaatgctgaaaaggttttggaactaggttttcaggagttcgtgct
tcctagctggatctttgacagcaaccattccgacggtgataccgacgatgacaaagttag
gaaaacagggaaaaagtcaggaagatcaaaacaaaaagcaccaatggcgccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAGCCCATGCCAACTGAATCA 292 327 474 Antisense
TAATGAAGTTCCACGTTTCTCCGAT 348 635 612 Antisense
GTTTCTCCGATAATCCAGTTTTTGG 184 451 626 Antisense
GTGACGATCTATGACGCTGTTTTTC 313 483 670 Antisense
GACGCTGTTTTTCATTCGTTGTCGA 219 381 682 Antisense
GAATGTTCAAACCACCGAGAGCTAC 386 331 705 Antisense
CGAGAGCTACACACTTCCAAGAGAA 72 249 720 Antisense
CTAGGTTTTCAGGAGTTCGTGCTTC 355 225 811 Antisense
TCGTGCTTCCTAGCTGGATCTTTGA 176 605 827 Antisense
TGACAGCAACCATTCCGACGGTGAT 700 569 849 Antisense
AACAAAAAGCACCAATGGCGCCGCC 16 133 923 Antisense
Sequence Source Affymetrix Proprietary Database