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[186326_at]

Description Y38H6C.12 /REP_DB=WormBase Gene ID /WP=CE19106 /TR=Q9XX38 /GB=CAA21001.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 04      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 32.3
(-1.3)
A 		17
(-3)
A 		22.5
(-2.4)
A 		71.3
(3)
A 		54
B 24.2
(-1.3)
A 		15.4
(-2.3)
A 		9.2
(-3)
A 		63.6
(3)
A 		54
C 48.3
(-1.5)
A 		46
(-1.7)
A 		27.6
(-3)
A 		110.9
(3)
A 		83
avr 34.9
(-1.5) 		26.1
(-2.4) 		19.8
(-3) 		81.9
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 65.2
(3)
A 		26
(-2.5)
A 		28.9
(-2.1)
A 		37.5
(-0.9)
A 		59.1
(2.1)
A 		22.3
(-3)
A 		43
B 5.9
(-2.3)
A 		26.4
(3)
A 		4.8
(-2.6)
A 		13
(-0.5)
A 		3.4
(-3)
A 		3.6
(-2.9)
A 		23
C 4.4
(-2.7)
A 		30
(0.3)
A 		4.9
(-2.7)
A 		52.5
(3)
A 		4.4
(-2.7)
A 		2.1
(-3)
A 		50
avr 25.2
(0.8) 		27.5
(1.4) 		12.9
(-2.1) 		34.3
(3) 		22.3
(0.1) 		9.3
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 11.8
(3)
A 		3.7
(-3)
A 		5.9
(-1.4)
A 		10.4
(2)
A 		8
B 7.7
(-0.1)
A 		3.8
(-2.1)
A 		2.1
(-3)
A 		13.5
(3)
A 		11
C 16
(1.2)
A 		13.2
(-0.6)
A 		9.6
(-3)
A 		18.7
(3)
A 		9
avr 11.8
(1.3) 		6.9
(-2.3) 		5.9
(-3) 		14.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 12
(0.2)
A 		9.3
(-1.1)
A 		6.3
(-2.6)
A 		9.5
(-1)
A 		17.8
(3)
A 		5.4
(-3)
A 		12
B 2.1
(-2.3)
A 		8.8
(3)
A 		1.2
(-3)
A 		3.4
(-1.3)
A 		1.4
(-2.8)
A 		1.3
(-2.9)
A 		8
C 1.6
(-2.5)
A 		9.2
(2.2)
A 		1.2
(-2.7)
A 		10.6
(3)
A 		1.4
(-2.6)
A 		0.7
(-3)
A 		10
avr 5.2
(-0.5) 		9.1
(3) 		2.9
(-2.6) 		7.8
(1.8) 		6.9
(1) 		2.5
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186326_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13557
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.12 NCBI
Target Description Y38H6C.12 /REP_DB=WormBase Gene ID /WP=CE19106 /TR=Q9XX38 /GB=CAA21001.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075554(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075554 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-166) (srh-166) mRNA, complete cds. 11/11 None
SNAP00000041325 ENSEMBL cdna:SNAP chromosome:CEL140:V:20522751:20523917:-1 11/11 None
GENEFINDER00000041336 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20522929:20523917:-1 10/11 None
Y38H6C.12 ENSEMBL cdna:known chromosome:CEL140:V:20522751:20523917:-1 gene:Y38H6C.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20522750-20523917(-) 98.91 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-166
Ensembl Y38H6C.12
Entrez Gene 189693 Entrez gene
SwissProt Q9XX38 EMBL-EBI
WormBase CE19106 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21001 Hypothetical protein Y38H6C.12 [Caenorhabditis elegans] ref|NP_507955.1| Serpentine Receptor, class H family member (srh-166) [Caenorhabditis elegans] 0.0
blast CAA21001 Hypothetical protein Y38H6C.12 [Caenorhabditis elegans] ref|NP_507955.1| Serpentine Receptor, class H family member (srh-166) [Caenorhabditis elegans] 1.0E-140
blast CAB05533 Hypothetical protein F57G8.3 [Caenorhabditis elegans] ref|NP_507128.2| Serpentine Receptor, class H family member (srh-167) [Caenorhabditis elegans] 5.0E-92
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 1.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.9E-30
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.4E-111
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507955.1 7 20-39,52-74,94-116,137-159,201-223,244-266,276-298
Y38H6C.12 7 20-39,52-74,94-116,137-159,201-223,244-266,276-298
SNAP00000041325 7 20-39,52-74,94-116,137-159,201-223,244-266,276-298
GENEFINDER00000041336 6 20-39,52-74,80-102,123-145,187-209,230-252
Sequence
Target Sequence 
>C. ELEGANS:186326_AT
ataacgttcattctaccttgctttttaaatattcccgatcaaaatcttggaaaactaatg
attatggagacaaatccctgcattccagaagaaaaaataaatcatcccgatttttttcta
ttaatcactgaatctggtccgctctacttgagcctcggaatcgcggctcttgttattctc
ccacagggcgcatttttcatcttaagtatattttggtatcttttcacgctgaaatcaaaa
tcgcgagccacaactcgtctgcaaaaacagttgttcttcgcaatgtgcttacaagtagcc
attccaatttccgctatttgtattccagccggttattgcgttgtagttgttgtcgtcggt
tattacaatcaagaagccaataatcttgctgtatttacaatggcacttcatggaggtcta
tcaacgtttgttatgctgaccgtgcacgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAACGTTCATTCTACCTTGCTTTT 611 23 457 Antisense
GAGACAAATCCCTGCATTCCAGAAG 412 393 523 Antisense
TTAATCACTGAATCTGGTCCGCTCT 387 685 577 Antisense
TCCGCTCTACTTGAGCCTCGGAATC 621 589 594 Antisense
CACAGGGCGCATTTTTCATCTTAAG 623 195 638 Antisense
TATTTTGGTATCTTTTCACGCTGAA 573 661 665 Antisense
AACAGTTGTTCTTCGCAATGTGCTT 134 137 722 Antisense
TACAAGTAGCCATTCCAATTTCCGC 36 641 746 Antisense
ATTTCCGCTATTTGTATTCCAGCCG 207 17 763 Antisense
ATTCCAGCCGGTTATTGCGTTGTAG 357 7 778 Antisense
TTTGTTATGCTGACCGTGCACGCAC 349 667 883 Antisense
Sequence Source Affymetrix Proprietary Database