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[186325_at]

Description H23L24.1 /REP_DB=WormBase Gene ID /WP=CE20982 /TR=Q9N5L2 /GB=AAF39892.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 82
(1.7)
A 		100.6
(3)
A 		17.1
(-3)
A 		77.4
(1.3)
A 		84
B 76.7
(3)
A 		65.2
(-1.1)
A 		63.3
(-1.7)
A 		59.7
(-3)
A 		17
C 141.1
(3)
A 		113.3
(1.5)
A 		30.1
(-3)
A 		71.7
(-0.8)
A 		111
avr 99.9
(3) 		93
(2.3) 		36.8
(-3) 		69.6
(0.1) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 122.3
(1)
A 		65.1
(-2.4)
A 		155
(3)
A 		56
(-3)
A 		101.8
(-0.2)
A 		60
(-2.8)
A 		99
B 113
(3)
A 		90
(1)
A 		80
(0.1)
A 		43.7
(-3)
A 		100
(1.9)
A 		54.4
(-2.1)
A 		69
C 81.2
(-1.3)
A 		100.3
(3)
A 		77.8
(-2.1)
A 		81.3
(-1.3)
A 		73.9
(-3)
A 		80.5
(-1.5)
A 		26
avr 105.5
(3) 		85.1
(0.3) 		104.3
(2.8) 		60.3
(-3) 		91.9
(1.2) 		65
(-2.4) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 29.8
(3)
A 		21.8
(1.1)
A 		4.5
(-3)
A 		11.3
(-1.4)
A 		25
B 24.5
(3)
A 		16.1
(-1.3)
A 		14.7
(-2)
A 		12.7
(-3)
A 		12
C 46.7
(3)
A 		32.6
(0.7)
A 		10.5
(-3)
A 		12.1
(-2.7)
A 		36
avr 33.7
(3) 		23.5
(0.4) 		9.9
(-3) 		12
(-2.5) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 22.5
(-0.5)
A 		23.1
(-0.3)
A 		33.8
(3)
A 		14.2
(-3)
A 		30.7
(2.1)
A 		14.6
(-2.9)
A 		20
B 39.3
(2.7)
A 		29.9
(0.8)
A 		19.4
(-1.4)
A 		11.6
(-3)
A 		40.6
(3)
A 		20.3
(-1.2)
A 		29
C 30.1
(2.8)
A 		30.6
(3)
A 		19.8
(-1.5)
A 		16.3
(-3)
A 		23.9
(0.2)
A 		27
(1.5)
A 		14
avr 30.6
(2.6) 		27.9
(1.7) 		24.3
(0.5) 		14
(-3) 		31.7
(3) 		20.6
(-0.8) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186325_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9146
Sequence Type Exemplar sequence
Representative Public ID H23L24.1 NCBI
Target Description H23L24.1 /REP_DB=WormBase Gene ID /WP=CE20982 /TR=Q9N5L2 /GB=AAF39892.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069097 NCBI Caenorhabditis elegans H23L24.1 (H23L24.1) mRNA, complete cds. 11/11 None
H23L24.1 ENSEMBL cdna:known chromosome:CEL140:IV:8718346:8720390:1 gene:H23L24.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025376 3/11 Cross Hyb Matching Probes None
GENEFINDER00000025377 8/11 Cross Hyb Matching Probes None
GENEFINDER00000025381 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8718351-8720396(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H23L24.1
Entrez Gene 186762 Entrez gene
SwissProt Q9N5L2 EMBL-EBI
WormBase CE20982 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39892 Hypothetical protein H23L24.1 [Caenorhabditis elegans] ref|NP_501498.1| H23L24.1 [Caenorhabditis elegans] 1.0E-160
blast CAE71547 Hypothetical protein CBG18490 [Caenorhabditis briggsae] 1.0E-71
blast CAE70035 Hypothetical protein CBG16459 [Caenorhabditis briggsae] 9.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186325_AT
gattttagactttcgactgctatccgaagagcagctttgtcacagtcgaagaaaaattcc
gaaatttcataaacttcatattagccccgcgagctatgtcacaacatgtgaacagtgccc
acagtgttatttcacatttccaatgcaatttgaacttccgatatcttggtccatagatcg
attattcgttgtcacaaagtcacaacctcatcaccaatcagctacagatgttccaattca
ttatgtgattgttgacaaaatgccaccaattggttcttctcttcgaaactgtagaataca
cgttcccagcatgattccaccgatttccgacaattttcaaattaaatttcttgctggttt
cttcatttcagcgtttggtgttatgttgttgatcagagctccagcatgggaacctgttgt
gttgattcaacatgaatgtgttccaaaaggagttcctttcaaatcaattaaacttctttt
taatcattctccggctcttcgaaacaagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTAGACTTTCGACTGCTATCC 216 429 246 Antisense
GAAGAGCAGCTTTGTCACAGTCGAA 479 339 271 Antisense
CATATTAGCCCCGCGAGCTATGTCA 149 213 322 Antisense
TGAACTTCCGATATCTTGGTCCATA 707 571 396 Antisense
ACCTCATCACCAATCAGCTACAGAT 458 87 450 Antisense
CACCAATTGGTTCTTCTCTTCGAAA 233 203 509 Antisense
GAATACACGTTCCCAGCATGATTCC 320 327 539 Antisense
ATTTCTTGCTGGTTTCTTCATTTCA 40 17 591 Antisense
GAGCTCCAGCATGGGAACCTGTTGT 366 387 641 Antisense
ACTTCTTTTTAATCATTCTCCGGCT 258 95 717 Antisense
ATTCTCCGGCTCTTCGAAACAAGAC 636 9 731 Antisense
Sequence Source Affymetrix Proprietary Database