[Home] | [Total List]

[186324_s_at]

Description Y51A2B.6B /REP_DB=WormBase Gene ID /WP=CE16661 /TR=O45959 /GB=CAA16395.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 2.6
(-2.8)
A 		8.3
(-1.9)
A 		1.3
(-3)
A 		40.3
(3)
A 		39
B 5.8
(-2)
A 		12.9
(-0.4)
A 		27.8
(3)
A 		1.5
(-3)
A 		26
C 3.5
(-2.5)
A 		5.1
(-2.2)
A 		1.6
(-3)
A 		26.8
(3)
A 		25
avr 4
(-3) 		8.8
(-1.5) 		10.2
(-1) 		22.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5
(-2.1)
A 		1.4
(-3)
A 		26.1
(3)
A 		5.9
(-1.9)
A 		23.2
(2.3)
A 		5.2
(-2.1)
A 		25
B 5.7
(0.6)
A 		3
(-1.6)
A 		8.5
(3)
A 		1.6
(-2.8)
A 		7.6
(2.2)
A 		1.4
(-3)
A 		7
C 2.3
(-2.6)
A 		13.1
(1)
A 		1
(-3)
A 		2
(-2.7)
A 		19.1
(3)
A 		3.4
(-2.2)
A 		18
avr 4.3
(-2.5) 		5.8
(-1.8) 		11.9
(0.9) 		3.2
(-3) 		16.6
(3) 		3.3
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1
(-2.3)
A 		1.8
(-1.4)
A 		0.3
(-3)
A 		5.9
(3)
A 		6
B 1.9
(-1.4)
A 		3.2
(-0.1)
A 		6.4
(3)
A 		0.3
(-3)
A 		6
C 1.1
(-2.2)
A 		1.5
(-1.6)
A 		0.6
(-3)
A 		4.5
(3)
A 		4
avr 1.3
(-3) 		2.2
(-0.7) 		2.4
(-0.1) 		3.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.9
(-2.6)
A 		0.5
(-3)
A 		5.7
(1.8)
A 		1.5
(-2.1)
A 		7
(3)
A 		1.3
(-2.3)
A 		7
B 2
(0.6)
A 		1
(-1.7)
A 		2.1
(0.8)
A 		0.4
(-3)
A 		3.1
(3)
A 		0.5
(-2.8)
A 		3
C 0.8
(-2.4)
A 		4
(0.8)
A 		0.2
(-3)
A 		0.4
(-2.8)
A 		6.2
(3)
A 		1.1
(-2.1)
A 		6
avr 1.2
(-2.5) 		1.8
(-1.7) 		2.7
(-0.5) 		0.8
(-3) 		5.4
(3) 		1
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186324_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13810
Sequence Type Exemplar sequence
Representative Public ID Y51A2B.6B NCBI
Target Description Y51A2B.6B /REP_DB=WormBase Gene ID /WP=CE16661 /TR=O45959 /GB=CAA16395.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029086 NCBI Caenorhabditis elegans Y51A2B.6 (Y51A2B.6) mRNA, complete cds. 11/11 None
SNAP00000034642 ENSEMBL cdna:SNAP chromosome:CEL140:V:18394581:18396826:-1 11/11 None
GENEFINDER00000034651 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18394083:18396877:-1 10/11 None
Y51A2B.6a ENSEMBL cdna:known chromosome:CEL140:V:18394581:18396826:-1 gene:Y51A2B.6 11/11 None
Y51A2B.6b ENSEMBL cdna:known chromosome:CEL140:V:18394581:18398323:-1 gene:Y51A2B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18394580-18398323(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51A2B.6
Entrez Gene 190131 Entrez gene
WormBase CE38749 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16394 Hypothetical protein Y51A2B.6 [Caenorhabditis elegans] ref|NP_001024257.1| Y51A2B.6 [Caenorhabditis elegans] 0.0
blast CAB05258 Hypothetical protein M162.7 [Caenorhabditis elegans] ref|NP_507838.1| M162.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.4E-14
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.4E-14
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.4E-14
Sequence
Target Sequence 
>C. ELEGANS:186324_S_AT
ttcagaacattcaagggataccctcagttgtttcagagtttttgaagaatcttgcaaaag
tcagagagatttctgataaaatgaaggaaaactcaaacaacaagacatttgtgatgaatg
ctttgtcgtttaacaaatcagattcaattaaaagtatcgtttcttctgtacaaaatgtct
atggcctgctagacttggaagccccaatcaatctgctgaagaatgtcgacaccattgttc
tcgaggagattgacaaagctcaagattcagcaaatctcaagtctcaatggggagatcaca
aggctgatatggaatctctggaagccaccatgacatcagctaaagcttttgtttcggaac
tcgaaggttgcagagctaaaacattgctggaatacacggatccattgaagaatctatcaa
agatccctgatgtcaaaatgaatgcaagtgagaaatccaaagtgattgaggagctgatta
aacagaatagtaacgatgatttgatagctgcaaaggagacactcgacaagattgctgtca
tgaatcttcagttttctagtgctcaatatccagaagcttcgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAGAACATTCAAGGGATACCCTC 222 685 1550 Antisense
TGTGATGAATGCTTTGTCGTTTAAC 58 555 1659 Antisense
TGTACAAAATGTCTATGGCCTGCTA 31 559 1716 Antisense
GACTTGGAAGCCCCAATCAATCTGC 309 371 1741 Antisense
GATTCAGCAAATCTCAAGTCTCAAT 280 431 1813 Antisense
GAATCTCTGGAAGCCACCATGACAT 399 329 1861 Antisense
GCTAAAGCTTTTGTTTCGGAACTCG 165 301 1888 Antisense
GAATCTATCAAAGATCCCTGATGTC 419 327 1959 Antisense
GATTGCTGTCATGAATCTTCAGTTT 93 435 2079 Antisense
TCTTCAGTTTTCTAGTGCTCAATAT 153 617 2094 Antisense
GCTCAATATCCAGAAGCTTCGTTCA 533 301 2110 Antisense
Sequence Source Affymetrix Proprietary Database