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[186323_at]

Description R10D12.14 /REP_DB=WormBase Gene ID /WP=CE12698 /TR=Q9XVJ6 /GB=CAB03249.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 48      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 46.4
(-3)
A 		104.2
(1)
A 		132.3
(3)
A 		124.5
(2.5)
A 		86
B 101.6
(1.7)
P 		77.9
(-0.1)
A 		118.5
(3)
A 		39.1
(-3)
A 		79
C 78
(-3)
M 		114.9
(1)
P 		132.9
(3)
P 		91.2
(-1.6)
M 		55
avr 75.3
(-3) 		99
(-0.3) 		127.9
(3) 		84.9
(-1.9) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 69.1
(-1.1)
A 		103.7
(0.8)
A 		40.1
(-2.6)
A 		32.5
(-3)
A 		81.8
(-0.4)
A 		145.6
(3)
P 		113
B 71.8
(2.3)
P 		60.5
(1.2)
A 		79.8
(3)
A 		14.3
(-3)
A 		70.2
(2.1)
A 		64.2
(1.6)
A 		66
C 188.4
(3)
P 		65.8
(-1.7)
A 		80.9
(-1.1)
A 		31.9
(-3)
A 		77.7
(-1.2)
M 		101.7
(-0.3)
A 		157
avr 109.8
(3) 		76.7
(0.6) 		66.9
(-0.1) 		26.2
(-3) 		76.6
(0.6) 		103.8
(2.6) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 16.9
(-3)
A 		22.6
(-1.1)
A 		34.6
(3)
A 		18.2
(-2.6)
A 		18
B 32.4
(3)
P 		19.2
(-0.3)
A 		27.5
(1.8)
A 		8.3
(-3)
A 		24
C 25.8
(-1)
M 		33
(0.4)
P 		46.3
(3)
P 		15.4
(-3)
M 		31
avr 25
(-0) 		24.9
(-0) 		36.1
(3) 		14
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 12.7
(-2.1)
A 		36.9
(3)
A 		8.7
(-2.9)
A 		8.2
(-3)
A 		24.7
(0.4)
A 		35.4
(2.7)
P 		29
B 25
(2.1)
P 		20.1
(1)
A 		19.4
(0.8)
A 		3.8
(-3)
A 		28.5
(3)
A 		23.9
(1.9)
A 		25
C 69.8
(3)
P 		20.1
(-1.7)
A 		20.6
(-1.7)
A 		6.4
(-3)
A 		25.1
(-1.2)
M 		34
(-0.4)
A 		63
avr 35.8
(3) 		25.7
(1) 		16.2
(-1) 		6.1
(-3) 		26.1
(1) 		31.1
(2.1) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186323_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13807
Sequence Type Exemplar sequence
Representative Public ID R10D12.14 NCBI
Target Description R10D12.14 /REP_DB=WormBase Gene ID /WP=CE12698 /TR=Q9XVJ6 /GB=CAB03249.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074070(11), NM_074068(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074070 NCBI Caenorhabditis elegans R10D12.14 (R10D12.14) mRNA, complete cds. 11/11 None
NM_074068 NCBI Caenorhabditis elegans R10D12.13a (R10D12.13) mRNA, complete cds. 9/11 None
SNAP00000021058 ENSEMBL cdna:SNAP chromosome:CEL140:V:13966560:13967771:1 11/11 None
GENEFINDER00000021069 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13966560:13967771:1 9/11 None
R10D12.13a ENSEMBL cdna:known chromosome:CEL140:V:13965034:13967993:1 gene:R10D12.13 9/11 A 
R10D12.14 ENSEMBL cdna:known chromosome:CEL140:V:13966556:13967771:1 gene:R10D12.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179891 3 1 NM_074068 186323_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13966559-13967771(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10D12.13
R10D12.14
Entrez Gene 3565237 Entrez gene
SwissProt Q9XVJ6 EMBL-EBI
WormBase CE12698 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03248 Hypothetical protein R10D12.13a [Caenorhabditis elegans] ref|NP_506469.1| R10D12.13a [Caenorhabditis elegans] 1.0E-137
blast CAB54296 Hypothetical protein R10D12.13b [Caenorhabditis elegans] ref|NP_506468.1| R10D12.13b [Caenorhabditis elegans] 1.0E-136
blast CAB03249 Hypothetical protein R10D12.14 [Caenorhabditis elegans] ref|NP_506471.1| R10D12.14 [Caenorhabditis elegans] 1.0E-117
blast CAB54295 Hypothetical protein R10D12.13c [Caenorhabditis elegans] ref|NP_506470.1| R10D12.13c [Caenorhabditis elegans] 1.0E-113
blast CAB03249 Hypothetical protein R10D12.14 [Caenorhabditis elegans] ref|NP_506471.1| R10D12.14 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR003169 EMBL-EBI GYF 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186323_AT
gatacttcaacgacggtctccaattgaaaactgaaaatgagccaaactatcatacgcttg
gagagtggagccaattgctcggaactcacccattcagtatgcctgtgcactcactggatg
cgacgattgctcagatgaactcaatgcggcctcacggagcaatgatgatggttccacctg
gacttcaaaatcaattccaaccaccgatgccgatgcgtttcccaccattccttccaatgc
cgcttctccatcaaatgaatcaaaatggaccaccaatgggtgctcaaatgcattctcagc
caccatcggagccaatcgacgctggatctctgtcccataccccagattccgagaacgaaa
cgcggttaaacgagcaaactctccagcagcctccatcgtggctaattgcccttggcctgg
cgggacatggtcgtaagccacaccatcatcagcaaattcttgcccatcagcacatcccac
agatgcagcacgctaatgttgccaccgaccaagttgtgatgaagagcgtcgagtgccaga
cagagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACTTCAACGACGGTCTCCAATT 580 423 131 Antisense
TCACCCATTCAGTATGCCTGTGCAC 445 625 216 Antisense
CCTGTGCACTCACTGGATGCGACGA 119 267 232 Antisense
TCAATGCGGCCTCACGGAGCAATGA 564 633 271 Antisense
GTGCTCAAATGCATTCTCAGCCACC 309 479 410 Antisense
ATCGGAGCCAATCGACGCTGGATCT 340 35 435 Antisense
TAAACGAGCAAACTCTCCAGCAGCC 273 641 497 Antisense
CCATCGTGGCTAATTGCCCTTGGCC 116 271 523 Antisense
TCAGCACATCCCACAGATGCAGCAC 36 625 597 Antisense
GATGCAGCACGCTAATGTTGCCACC 21 413 612 Antisense
AGAGCGTCGAGTGCCAGACAGAGCC 585 67 653 Antisense
Sequence Source Affymetrix Proprietary Database