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[186322_s_at]

Description Y51A2D.7B /REP_DB=WormBase Gene ID /WP=CE24410 /TR=Q9U267 /GB=CAA16410.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 39      6grp_total > 29      4grp_total > 58      6grp_high1_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 148.5
(1.6)
P 		159.7
(2.3)
A 		171
(3)
M 		77.7
(-3)
A 		93
B 111.7
(-1.5)
P 		199.5
(3)
A 		154.5
(0.7)
A 		82.6
(-3)
M 		117
C 104.6
(-3)
P 		136.2
(1.7)
A 		145.1
(3)
A 		111.1
(-2)
P 		41
avr 121.6
(-0.5) 		165.1
(3) 		156.9
(2.3) 		90.5
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 142.2
(1.1)
P 		112.1
(-1.4)
A 		105.6
(-2)
P 		93.3
(-3)
P 		145.7
(1.4)
P 		164.8
(3)
P 		72
B 186.9
(3)
P 		113.5
(-2.1)
P 		100
(-3)
A 		126.4
(-1.2)
P 		129.7
(-0.9)
P 		140.2
(-0.2)
P 		87
C 144
(0.9)
P 		109.6
(-0.9)
P 		69.1
(-3)
A 		106.8
(-1)
P 		183.2
(3)
P 		101.6
(-1.3)
P 		114
avr 157.7
(3) 		111.7
(-1.2) 		91.6
(-3) 		108.8
(-1.4) 		152.9
(2.6) 		135.5
(1) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 54.1
(3)
P 		34.7
(0.3)
A 		44.7
(1.7)
M 		11.4
(-3)
A 		43
B 35.6
(0.4)
P 		49.3
(3)
A 		35.8
(0.4)
A 		17.6
(-3)
M 		32
C 34.6
(-0)
P 		39.2
(0.9)
A 		50.6
(3)
A 		18.7
(-3)
P 		32
avr 41.4
(2.5) 		41.1
(2.4) 		43.7
(3) 		15.9
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 26.2
(-2.1)
P 		39.9
(1.8)
A 		23
(-3)
P 		23.7
(-2.8)
P 		44
(3)
P 		40.1
(1.9)
P 		21
B 65
(3)
P 		37.8
(-1)
P 		24.3
(-3)
A 		33.5
(-1.6)
P 		52.7
(1.2)
P 		52.3
(1.1)
P 		41
C 53.4
(2.2)
P 		33.4
(-0.7)
P 		17.6
(-3)
A 		21.5
(-2.4)
P 		59.3
(3)
P 		34
(-0.6)
P 		42
avr 48.2
(2.3) 		37
(0) 		21.6
(-3) 		26.2
(-2.1) 		52
(3) 		42.1
(1) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186322_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14741
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.7B NCBI
Target Description Y51A2D.7B /REP_DB=WormBase Gene ID /WP=CE24410 /TR=Q9U267 /GB=CAA16410.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075225(9), NM_075224(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075225 NCBI Caenorhabditis elegans Y51A2D.7a (Y51A2D.7) mRNA, complete cds. 9/11 A 
NM_075224 NCBI Caenorhabditis elegans Y51A2D.7b (Y51A2D.7) mRNA, complete cds. 9/11 A 
GENEFINDER00000034279 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18536538:18551599:1 11/11 None
Y51A2D.7a ENSEMBL cdna:known chromosome:CEL140:V:18540115:18551617:1 gene:Y51A2D.7 11/11 A 
Y51A2D.7b ENSEMBL cdna:known chromosome:CEL140:V:18540115:18551599:1 gene:Y51A2D.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18540114-18551599(+) 96.24 100.0
Public Domain and Genome References
Ensembl Y51A2D.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16406 Hypothetical protein Y51A2D.7a [Caenorhabditis elegans] ref|NP_507626.2| Y51A2D.7a [Caenorhabditis elegans] 0.0
blast CAA16410 Hypothetical protein Y51A2D.7b [Caenorhabditis elegans] ref|NP_507625.2| Y51A2D.7b [Caenorhabditis elegans] 0.0
blast CAA16406 Hypothetical protein Y51A2D.7a [Caenorhabditis elegans] ref|NP_507626.2| Y51A2D.7a [Caenorhabditis elegans] 1.0E-169
blast CAE67435 Hypothetical protein CBG12925 [Caenorhabditis briggsae] 1.0E-167
Sequence
Target Sequence 
>C. ELEGANS:186322_S_AT
caaaaaaccaaccattccagacacgttgaaatcgcccaacgcatcgcccgttcgccgttc
tccgacggaatcctgcgtattcttgccgaaactcgaagtttcgcctactgcctgcctatc
atgaagtcgaagttggccgtgctgctcaacgataccgaaaaattccccgaacacgtagca
atttccgagccaacgcggcaaaagctacaaaactgggtgtttttggcgcaaaaaggcggg
attttgcccggcagactggcgccgatttgcgatttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAAAACCAACCATTCCAGACACG 336 191 2038 Antisense
TTCCAGACACGTTGAAATCGCCCAA 511 695 2052 Antisense
TCCGACGGAATCCTGCGTATTCTTG 205 595 2098 Antisense
CTGCGTATTCTTGCCGAAACTCGAA 415 237 2110 Antisense
GAAACTCGAAGTTTCGCCTACTGCC 610 357 2125 Antisense
CTACTGCCTGCCTATCATGAAGTCG 476 225 2142 Antisense
TGAAGTCGAAGTTGGCCGTGCTGCT 583 575 2159 Antisense
TTCCCCGAACACGTAGCAATTTCCG 688 687 2200 Antisense
TAGCAATTTCCGAGCCAACGCGGCA 223 633 2213 Antisense
AAGGCGGGATTTTGCCCGGCAGACT 215 159 2270 Antisense
GACTGGCGCCGATTTGCGATTTGGA 653 375 2291 Antisense
Sequence Source Affymetrix Proprietary Database