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[186321_at]

Description Y38H6C.14 /REP_DB=WormBase Gene ID /WP=CE19108 /TR=Q9XX47 /GB=CAA20992.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 33.5
(-0.2)
A 		10.5
(-3)
A 		10.4
(-3)
A 		60.4
(3)
A 		50
B 25.3
(-0.5)
A 		12.1
(-3)
A 		43.8
(3)
A 		23.3
(-0.9)
A 		32
C 36.1
(-0.3)
A 		23.1
(-3)
A 		29.6
(-1.7)
A 		52.4
(3)
A 		29
avr 31.6
(0.3) 		15.2
(-3) 		27.9
(-0.5) 		45.4
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 20.9
(3)
A 		7.8
(-1.5)
A 		12.7
(0.2)
A 		3.5
(-3)
A 		6.6
(-1.9)
A 		8.6
(-1.2)
A 		17
B 16.6
(2.4)
A 		6.8
(-1.3)
A 		2.4
(-3)
A 		7
(-1.3)
A 		18.2
(3)
A 		6.3
(-1.5)
A 		16
C 12.5
(3)
A 		5.6
(-1.2)
A 		9.3
(1.1)
A 		4.8
(-1.7)
A 		7.8
(0.2)
A 		2.6
(-3)
A 		10
avr 16.7
(3) 		6.7
(-2.2) 		8.1
(-1.4) 		5.1
(-3) 		10.9
(0) 		5.8
(-2.6) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 12.2
(3)
A 		2.3
(-3)
A 		2.7
(-2.8)
A 		8.8
(0.9)
A 		10
B 8.1
(1.3)
A 		3
(-3)
A 		10.2
(3)
A 		5
(-1.3)
A 		7
C 11.9
(3)
A 		6.6
(-3)
A 		10.3
(1.2)
A 		8.8
(-0.5)
A 		5
avr 10.7
(3) 		4
(-3) 		7.7
(0.3) 		7.5
(0.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3.9
(3)
A 		2.8
(0.8)
A 		2.8
(0.8)
A 		0.9
(-3)
A 		2
(-0.8)
A 		2.1
(-0.6)
A 		3
B 5.8
(1.6)
A 		2.3
(-1.5)
A 		0.6
(-3)
A 		1.9
(-1.9)
A 		7.4
(3)
A 		2.4
(-1.4)
A 		7
C 4.6
(3)
A 		1.7
(-1.7)
A 		2.4
(-0.6)
A 		1
(-2.8)
A 		2.5
(-0.4)
A 		0.9
(-3)
A 		4
avr 4.8
(3) 		2.3
(-1.3) 		1.9
(-2) 		1.3
(-3) 		4
(1.6) 		1.8
(-2.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186321_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13772
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.14 NCBI
Target Description Y38H6C.14 /REP_DB=WormBase Gene ID /WP=CE19108 /TR=Q9XX47 /GB=CAA20992.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075556(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075556 NCBI Caenorhabditis elegans Y38H6C.14 (Y38H6C.14) mRNA, complete cds. 11/11 None
SNAP00000041327 ENSEMBL cdna:SNAP chromosome:CEL140:V:20528074:20534275:-1 11/11 None
GENEFINDER00000041344 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20528074:20531538:-1 11/11 None
Y38H6C.14 ENSEMBL cdna:known chromosome:CEL140:V:20528074:20532220:-1 gene:Y38H6C.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20528073-20531538(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38H6C.14
Entrez Gene 189695 Entrez gene
SwissProt Q9XX47 EMBL-EBI
WormBase CE19108 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20992 Hypothetical protein Y38H6C.14 [Caenorhabditis elegans] ref|NP_507957.1| Y38H6C.14 [Caenorhabditis elegans] 0.0
blast CAE61668 Hypothetical protein CBG05607 [Caenorhabditis briggsae] 0.0
blast CAA20993 Hypothetical protein Y38H6C.15 [Caenorhabditis elegans] ref|NP_507958.1| Y38H6C.15 [Caenorhabditis elegans] 2.0E-38
blast AAH80431 MGC86499 protein [Xenopus laevis] 9.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000041327 2 4-23,147-169
Sequence
Target Sequence 
>C. ELEGANS:186321_AT
cactcacgcaacacaacttcgcgaggagctcaaccgagcaaaaattgagctgaaaaagtc
tgaaaaatcgggaaaaaacgggaatttctgggctgaagataataagcagaggatttcctc
gtttttgggagcacggagcaaaactgaggaggatattgcgatgaggacaaagcagaaact
gcaacaacagcaggaaacaactcaagaatacatgaggcagctggccgagatgaagcagag
agtgctcaacggcccgctaatcatggaaaaacagacggccctggcgcaggagcaccgtct
aaaacgaaaatttgaggaacgcatgaaaagcgccaaggggcgaggtatagaaagggtcca
aagccaggaaaagcagcaatcaatcgggagaagaagctcagaagttagtggaagtggaac
ttttgtggttgacaagggttatgaagagagttttgagtcggaagacaagtctgaaaagtc
tggaagttccacgccatctgagtctggaagtggttctgaatccgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTCACGCAACACAACTTCGCGAG 532 197 1830 Antisense
GCAACACAACTTCGCGAGGAGCTCA 535 319 1837 Antisense
TTTCCTCGTTTTTGGGAGCACGGAG 7 669 1943 Antisense
GAGGCAGCTGGCCGAGATGAAGCAG 381 405 2043 Antisense
GAAGCAGAGAGTGCTCAACGGCCCG 681 341 2061 Antisense
TCAACGGCCCGCTAATCATGGAAAA 242 629 2075 Antisense
TGGAAAAACAGACGGCCCTGGCGCA 130 547 2093 Antisense
GCGCAGGAGCACCGTCTAAAACGAA 520 287 2113 Antisense
AAGTCTGGAAGTTCCACGCCATCTG 566 157 2305 Antisense
GTTCCACGCCATCTGAGTCTGGAAG 191 439 2315 Antisense
GTCTGGAAGTGGTTCTGAATCCGAG 707 471 2331 Antisense
Sequence Source Affymetrix Proprietary Database