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[186320_at]

Description Y49F6C.8 /REP_DB=WormBase Gene ID /WP=CE22272 /TR=Q9TYJ3 /GB=AAD12860.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 4.8
(-2.7)
A 		2.7
(-3)
A 		5.5
(-2.7)
A 		50.9
(3)
A 		48
B 22.6
(0.3)
A 		30.7
(3)
A 		15.5
(-2)
A 		12.4
(-3)
A 		18
C 13.2
(-3)
A 		27.4
(-0.8)
A 		20.6
(-1.9)
A 		51.9
(3)
A 		39
avr 13.5
(-3) 		20.3
(-1.4) 		13.9
(-2.9) 		38.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 30.9
(-0)
A 		7
(-3)
A 		14.8
(-2)
A 		44.2
(1.6)
A 		55.3
(3)
A 		43.4
(1.5)
P 		48
B 2.3
(-3)
A 		4.1
(-2.9)
A 		3.3
(-2.9)
A 		3.6
(-2.9)
A 		73.9
(0.7)
P 		118.7
(3)
P 		116
C 8.5
(-2.8)
A 		37.7
(-1.3)
A 		3.7
(-3)
A 		30.6
(-1.6)
A 		78.2
(0.8)
A 		122.6
(3)
P 		119
avr 13.9
(-2.5) 		16.3
(-2.4) 		7.3
(-3) 		26.1
(-1.7) 		69.1
(1.2) 		94.9
(3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.7
(-2)
A 		0.6
(-3)
A 		1.4
(-2.3)
A 		7.5
(3)
A 		7
B 7.2
(2.5)
A 		7.6
(3)
A 		3.6
(-1.8)
A 		2.6
(-3)
A 		5
C 4.4
(-3)
A 		7.9
(1.8)
A 		7.2
(0.8)
A 		8.8
(3)
A 		4
avr 4.4
(-2.2) 		5.4
(0.5) 		4.1
(-3) 		6.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 5.7
(-1.6)
A 		2.5
(-3)
A 		3.2
(-2.7)
A 		11.2
(0.7)
A 		16.7
(3)
A 		10.6
(0.4)
P 		14
B 0.8
(-3)
A 		1.4
(-2.9)
A 		0.8
(-3)
A 		1
(-3)
A 		30
(1)
P 		44.3
(3)
P 		44
C 3.2
(-2.7)
A 		11.5
(-1.4)
A 		0.9
(-3)
A 		6.2
(-2.2)
A 		25.3
(0.7)
A 		41
(3)
P 		40
avr 3.2
(-2.7) 		5.1
(-2.3) 		1.6
(-3) 		6.1
(-2.1) 		24
(1.4) 		32
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4859
Sequence Type Exemplar sequence
Representative Public ID Y49F6C.8 NCBI
Target Description Y49F6C.8 /REP_DB=WormBase Gene ID /WP=CE22272 /TR=Q9TYJ3 /GB=AAD12860.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062120 NCBI Caenorhabditis elegans Y49F6C.8 (Y49F6C.8) mRNA, complete cds. 11/11 None
SNAP00000037273 ENSEMBL cdna:SNAP chromosome:CEL140:II:3369277:3370087:-1 11/11 None
GENEFINDER00000037282 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3369277:3370087:-1 11/11 None
Y49F6C.8 ENSEMBL cdna:known chromosome:CEL140:II:3369277:3370087:-1 gene:Y49F6C.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3369275-3370086(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49F6C.8
Entrez Gene 190089 Entrez gene
SwissProt Q9TYJ3 EMBL-EBI
WormBase CE22272 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12860 Hypothetical protein Y49F6C.8 [Caenorhabditis elegans] ref|NP_494521.1| Y49F6C.8 [Caenorhabditis elegans] 1.0E-79
Sequence
Target Sequence 
>C. ELEGANS:186320_AT
cccaactccttcactgattcagtgtttggaatgatccggaatttgcttgtcagtattcgg
gctgggcttttcgagcttacaatcaagcaacccgtcactcaaaattcgttgcaacgctac
caagaggagcatcgggaggaaaagcagcagtacctgcgtcaagcgatattggatctcgcg
gaagattcggaagaagaggacgatggacagcctcttgataaagaaacactttcgaagatg
atcgcggagctgacaattgaacgaaataatcttagacgaagtttcaacatcgtcaatgag
caacggacaggttcaaaggaccgtcaacatatggaagaggagatcaggattcagaattgg
acgaaggaagatcgggaggagttggagagcggcttggcggtcatgcgccagacaattcaa
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAACTCCTTCACTGATTCAGTGT 40 259 25 Antisense
AATGATCCGGAATTTGCTTGTCAGT 283 165 54 Antisense
GCTTGTCAGTATTCGGGCTGGGCTT 194 307 69 Antisense
GCTGGGCTTTTCGAGCTTACAATCA 163 295 85 Antisense
TCAAGCAACCCGTCACTCAAAATTC 330 631 107 Antisense
ATTCGTTGCAACGCTACCAAGAGGA 469 3 128 Antisense
AGCAGTACCTGCGTCAAGCGATATT 601 75 170 Antisense
GGACGATGGACAGCCTCTTGATAAA 658 523 222 Antisense
GGACAGGTTCAAAGGACCGTCAACA 507 525 329 Antisense
AGGAGTTGGAGAGCGGCTTGGCGGT 248 57 401 Antisense
GCGGTCATGCGCCAGACAATTCAAG 291 293 421 Antisense
Sequence Source Affymetrix Proprietary Database