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[186318_s_at]

Description F55G1.12 /REP_DB=WormBase Gene ID /WP=CE28457 /TR=Q20851 /GB=AAB00652.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      4grp_high_8_8 > 33      6grp_total > 12      4grp_total > 46      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 124.4
(3)
P 		59.4
(-1.2)
P 		31.6
(-3)
A 		53.5
(-1.6)
P 		93
B 114.6
(3)
P 		70.6
(-0.8)
P 		63.2
(-1.5)
P 		46
(-3)
A 		69
C 138.3
(3)
P 		58.9
(-1.6)
P 		35.1
(-3)
P 		57
(-1.7)
P 		103
avr 125.8
(3) 		63
(-1.6) 		43.3
(-3) 		52.2
(-2.4) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 71.5
(1.2)
P 		85.2
(3)
P 		68.8
(0.8)
P 		48.9
(-1.8)
P 		40.2
(-3)
P 		46.8
(-2.1)
A 		45
B 83.1
(2.6)
P 		87.7
(3)
P 		62.8
(0.7)
P 		71.4
(1.5)
P 		33
(-2.1)
P 		23.7
(-3)
P 		64
C 93.3
(1)
P 		131.9
(3)
P 		44.6
(-1.5)
P 		59.7
(-0.7)
A 		28.4
(-2.4)
P 		16.1
(-3)
P 		116
avr 82.6
(1.4) 		101.6
(3) 		58.7
(-0.5) 		60
(-0.4) 		33.9
(-2.6) 		28.9
(-3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 45.3
(3)
P 		12.9
(-2.2)
P 		8.3
(-2.9)
A 		7.8
(-3)
P 		38
B 36.5
(3)
P 		17.4
(-1.3)
P 		14.7
(-1.9)
P 		9.8
(-3)
A 		27
C 45.8
(3)
P 		16.9
(-1.8)
P 		12.2
(-2.6)
P 		9.6
(-3)
P 		36
avr 42.5
(3) 		15.7
(-1.8) 		11.7
(-2.5) 		9.1
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 13.2
(-2.4)
P 		30.3
(3)
P 		15
(-1.9)
P 		12.4
(-2.7)
P 		12.1
(-2.8)
P 		11.4
(-3)
A 		19
B 28.9
(2.9)
P 		29.2
(3)
P 		15.3
(-1.1)
P 		18.9
(-0)
P 		13.4
(-1.6)
P 		8.8
(-3)
P 		20
C 34.6
(2)
P 		40.3
(3)
P 		11.3
(-2)
P 		12
(-1.9)
A 		9.2
(-2.3)
P 		5.4
(-3)
P 		35
avr 25.6
(1.1) 		33.3
(3) 		13.9
(-1.7) 		14.4
(-1.6) 		11.6
(-2.3) 		8.5
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186318_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9459
Sequence Type Exemplar sequence
Representative Public ID F55G1.12 NCBI
Target Description F55G1.12 /REP_DB=WormBase Gene ID /WP=CE28457 /TR=Q20851 /GB=AAB00652.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068805 NCBI Caenorhabditis elegans F55G1.12 (F55G1.12) mRNA, complete cds. 11/11 None
SNAP00000005176 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7493827:7501286:-1 11/11 None
GENEFINDER00000005182 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7493827:7501286:-1 11/11 None
F55G1.12 ENSEMBL cdna:known chromosome:CEL140:IV:7493827:7495281:-1 gene:F55G1.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7493832-7495287(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G1.12
Entrez Gene 177523 Entrez gene
SwissProt Q20851 EMBL-EBI
WormBase CE28457 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6814 sodium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5272 sodium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00653 Hypothetical protein F55G1.13 [Caenorhabditis elegans] ref|NP_501207.1| F55G1.13 [Caenorhabditis elegans] 0.0
blast CAE61899 Hypothetical protein CBG05890 [Caenorhabditis briggsae] 0.0
blast AAB00655 Hypothetical protein F55G1.15 [Caenorhabditis elegans] ref|NP_501209.3| F55G1.15 [Caenorhabditis elegans] 1.0E-169
blast AAB00652 Hypothetical protein F55G1.12 [Caenorhabditis elegans] ref|NP_501206.1| F55G1.12 [Caenorhabditis elegans] 1.0E-127
blast CAE61898 Hypothetical protein CBG05889 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 5.4E-29
Pfam IPR006209 EMBL-EBI EGF-like domain 8.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 9.5E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 1.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 7.7E-33
Pfam IPR006209 EMBL-EBI EGF-like domain 1.7E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 8.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 9.5E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 7.7E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501206.1 1 231-262
F55G1.12 1 231-262
SNAP00000005176 11 24-46,53-75,95-117,137-159,174-196,242-264,319-341,362-384,394-416,473-495,1407-1438
GENEFINDER00000005182 11 24-46,53-75,95-117,137-159,174-196,242-264,319-341,362-384,394-416,473-495,1419-1450
Sequence
Target Sequence 
>C. ELEGANS:186318_S_AT
ccaaactgtctacacttccaaactgtctagaagtgaaccaaaaaaggtgttctacaatca
gaatttaaagttcaaccttttggaaatttgtgtaatttacgaaattttgtcagaaagttt
tttgagtattgttgactgcgaagaggcgtacaccaataaaactgcatgttatgaaacatt
tttggattctgtcattttgagaatttctcttccaaaattggattatatgatttacagtga
aacacctgctatggatctcacaaaattcatgtcttatttgggtggtattttgagcatttt
gataggcgtctctatagtttcattcgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAACTGTCTACACTTCCAAACTG 298 275 504 Antisense
CTGTCTACACTTCCAAACTGTCTAG 546 237 509 Antisense
GTTGACTGCGAAGAGGCGTACACCA 307 439 634 Antisense
GAGGCGTACACCAATAAAACTGCAT 58 407 646 Antisense
CATTTTTGGATTCTGTCATTTTGAG 399 215 680 Antisense
GAGAATTTCTCTTCCAAAATTGGAT 623 389 702 Antisense
GATTTACAGTGAAACACCTGCTATG 313 429 732 Antisense
AAACACCTGCTATGGATCTCACAAA 407 129 743 Antisense
GGATCTCACAAAATTCATGTCTTAT 177 513 756 Antisense
ATTCATGTCTTATTTGGGTGGTATT 62 13 768 Antisense
GCGTCTCTATAGTTTCATTCGTCGA 682 291 809 Antisense
Sequence Source Affymetrix Proprietary Database