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[186317_at]

Description F55G1.12 /REP_DB=WormBase Gene ID /WP=CE28457 /TR=Q20851 /GB=AAB00652.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 62      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 12.6
(-0.4)
A 		5.7
(-2.6)
A 		23.3
(3)
A 		4.6
(-3)
A 		19
B 45.4
(3)
A 		31.7
(1.1)
A 		18.3
(-0.7)
A 		1.8
(-3)
A 		44
C 45
(3)
A 		23.5
(-0.4)
A 		16.3
(-1.5)
A 		6.8
(-3)
A 		38
avr 34.3
(3) 		20.3
(0.2) 		19.3
(-0) 		4.4
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 39.2
(3)
A 		15.7
(-0.8)
A 		5.1
(-2.6)
A 		4.5
(-2.7)
A 		2.4
(-3)
A 		3.1
(-2.9)
A 		37
B 35.3
(1.3)
A 		9.7
(-2)
A 		48.7
(3)
A 		38.4
(1.7)
A 		2.1
(-2.9)
A 		1.7
(-3)
A 		47
C 38.2
(3)
A 		19.4
(-0.1)
A 		7.4
(-2.1)
A 		7.9
(-2)
A 		27
(1.2)
A 		1.8
(-3)
A 		36
avr 37.6
(3) 		14.9
(-0.8) 		20.4
(0.1) 		16.9
(-0.5) 		10.5
(-1.6) 		2.2
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.6
(1.3)
A 		1.2
(-2.4)
A 		6.1
(3)
A 		0.7
(-3)
A 		5
B 14.5
(3)
A 		7.8
(0.1)
A 		4.2
(-1.4)
A 		0.4
(-3)
A 		14
C 14.9
(3)
A 		6.7
(-0.6)
A 		5.7
(-1)
A 		1.1
(-3)
A 		14
avr 11.3
(3) 		5.2
(-0.5) 		5.3
(-0.4) 		0.7
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.2
(3)
A 		5.6
(1.5)
A 		1.1
(-2.6)
A 		1.1
(-2.6)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		7
B 12.3
(3)
A 		3.2
(-1.7)
A 		11.8
(2.7)
A 		10.2
(1.9)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		12
C 14.1
(3)
A 		5.9
(-0.6)
A 		1.9
(-2.4)
A 		1.6
(-2.6)
A 		8.7
(0.6)
A 		0.6
(-3)
A 		14
avr 11.2
(3) 		4.9
(-0.6) 		4.9
(-0.6) 		4.3
(-0.9) 		3.4
(-1.5) 		0.7
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9459
Sequence Type Exemplar sequence
Representative Public ID F55G1.12 NCBI
Target Description F55G1.12 /REP_DB=WormBase Gene ID /WP=CE28457 /TR=Q20851 /GB=AAB00652.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068805
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000005182 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7493827:7501286:-1 None
SNAP00000005176 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7493827:7501286:-1 None
NM_068805 NCBI Caenorhabditis elegans F55G1.12 (F55G1.12) mRNA, complete cds. A 
F55G1.12 ENSEMBL cdna:known chromosome:CEL140:IV:7493827:7495281:-1 gene:F55G1.12 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7493832-7495287(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G1.12
Entrez Gene 177523 Entrez gene
SwissProt Q20851 EMBL-EBI
WormBase CE28457 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6814 sodium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5272 sodium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00653 Hypothetical protein F55G1.13 [Caenorhabditis elegans] ref|NP_501207.1| F55G1.13 [Caenorhabditis elegans] 0.0
blast CAE61899 Hypothetical protein CBG05890 [Caenorhabditis briggsae] 0.0
blast AAB00655 Hypothetical protein F55G1.15 [Caenorhabditis elegans] ref|NP_501209.3| F55G1.15 [Caenorhabditis elegans] 1.0E-169
blast AAB00652 Hypothetical protein F55G1.12 [Caenorhabditis elegans] ref|NP_501206.1| F55G1.12 [Caenorhabditis elegans] 1.0E-127
blast CAE61898 Hypothetical protein CBG05889 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 5.4E-29
Pfam IPR006209 EMBL-EBI EGF-like domain 8.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 9.5E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 1.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 7.7E-33
Pfam IPR006209 EMBL-EBI EGF-like domain 1.7E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 8.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 9.5E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 7.7E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501206.1 1 231-262
F55G1.12 1 231-262
SNAP00000005176 11 24-46,53-75,95-117,137-159,174-196,242-264,319-341,362-384,394-416,473-495,1407-1438
GENEFINDER00000005182 11 24-46,53-75,95-117,137-159,174-196,242-264,319-341,362-384,394-416,473-495,1419-1450
Sequence
Target Sequence 
>C. ELEGANS:186317_AT
gatggttgtctcagatcttgttatcaagatgtggtgaatggagattgtggttgtatggac
cctaggtatcctatgccaaatgatgggatttcttgtagtatttcacaaaaaacatgtatt
gatgagttggtagattcaagaggagatccatccacctggccagaatgtacttgtccactt
ccatgctcccaaactgtctacacttccaaactgtctagaagtgaaccaaaaaaggtgttc
tacaatcagaatttaaagttcaaccttttggaaatttgtgtaatttacgaaattttgtca
gaaagttttttgagtattgttgactgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGTTGTCTCAGATCTTGTTATC 687 407 316 Antisense
GGAGATTGTGGTTGTATGGACCCTA 277 517 355 Antisense
ATGGACCCTAGGTATCCTATGCCAA 550 51 370 Antisense
TAGGTATCCTATGCCAAATGATGGG 48 655 378 Antisense
GATGGGATTTCTTGTAGTATTTCAC 614 407 397 Antisense
GGTAGATTCAAGAGGAGATCCATCC 456 503 444 Antisense
TCCATCCACCTGGCCAGAATGTACT 268 591 462 Antisense
CAGAATGTACTTGTCCACTTCCATG 388 203 476 Antisense
TTCCAAACTGTCTAGAAGTGAACCA 703 695 519 Antisense
AAAGGTGTTCTACAATCAGAATTTA 679 119 546 Antisense
GTTTTTTGAGTATTGTTGACTGCGA 388 447 620 Antisense
Sequence Source Affymetrix Proprietary Database