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[186315_at]

Description Y48C3A.10 /REP_DB=WormBase Gene ID /WP=CE22143 /TR=Q9NAG2 /GB=CAB55109.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 44      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 76      6grp_total > 35      4grp_total > 58      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1446
1 2 3 4 range
A 962.3
(-0.5)
P 		1521.1
(3)
P 		1460
(2.6)
P 		556.2
(-3)
P 		965
B 1058.1
(-0.8)
P 		1496.2
(1.7)
P 		1708.4
(3)
P 		691.7
(-3)
P 		1017
C 1126.8
(-0.9)
P 		2002.6
(3)
P 		1492.4
(0.7)
P 		652.3
(-3)
P 		1350
avr 1049.1
(-0.6) 		1673.3
(3) 		1553.6
(2.3) 		633.4
(-3) 		1040

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 488
1 2 3 4 5 6 range
A 1053.5
(0.6)
P 		1209.6
(2.6)
P 		1246.1
(3)
P 		914.9
(-1.1)
P 		758.3
(-3)
P 		760.7
(-3)
P 		488
B 1034.9
(0.6)
P 		1138
(3)
P 		1072.9
(1.5)
P 		878
(-3)
P 		991.5
(-0.4)
P 		1062.8
(1.3)
P 		260
C 997.3
(0.4)
P 		1093.1
(2.1)
P 		1027.8
(0.9)
P 		1135.2
(2.9)
P 		811.4
(-3)
P 		1141
(3)
P 		330
avr 1028.6
(0.6) 		1146.9
(3) 		1115.6
(2.4) 		976
(-0.5) 		853.7
(-3) 		988.2
(-0.2) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 494
1 2 3 4 range
A 350.4
(2.4)
P 		330.2
(2)
P 		381.7
(3)
P 		81.4
(-3)
P 		300
B 337.4
(1.6)
P 		369.5
(2.4)
P 		395.9
(3)
P 		147.4
(-3)
P 		249
C 373
(0.4)
P 		575.8
(3)
P 		520.1
(2.3)
P 		110
(-3)
P 		466
avr 353.6
(1.5) 		425.2
(2.9) 		432.6
(3) 		112.9
(-3) 		320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 194.2
(-2.8)
P 		430.2
(3)
P 		271.4
(-0.9)
P 		232
(-1.9)
P 		228.8
(-1.9)
P 		185.2
(-3)
P 		245
B 360.1
(1.5)
P 		378.8
(2.2)
P 		260.5
(-2)
P 		232.5
(-3)
P 		402.8
(3)
P 		396.3
(2.8)
P 		170
C 369.7
(2.5)
P 		333.5
(1.1)
P 		261.6
(-1.7)
P 		228.3
(-3)
P 		262.6
(-1.7)
P 		381.9
(3)
P 		154
avr 308
(0.1) 		380.8
(3) 		264.5
(-1.7) 		230.9
(-3) 		298.1
(-0.3) 		321.1
(0.6) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186315_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3969
Sequence Type Exemplar sequence
Representative Public ID Y48C3A.10 NCBI
Target Description Y48C3A.10 /REP_DB=WormBase Gene ID /WP=CE22143 /TR=Q9NAG2 /GB=CAB55109.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064416(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064416 NCBI Caenorhabditis elegans Y48C3A.10 (Y48C3A.10) mRNA, complete cds. 11/11 None
SNAP00000006617 ENSEMBL cdna:SNAP chromosome:CEL140:II:13335868:13339778:1 11/11 None
GENEFINDER00000006668 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13338178:13339778:1 11/11 None
Y48C3A.10 ENSEMBL cdna:known chromosome:CEL140:II:13338177:13339778:1 gene:Y48C3A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13338174-13339775(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48C3A.10
Entrez Gene 174976 Entrez gene
SwissProt Q9NAG2 EMBL-EBI
WormBase CE22143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55109 Hypothetical protein Y48C3A.10 [Caenorhabditis elegans] ref|NP_496817.1| Y48C3A.10 [Caenorhabditis elegans] 1.0E-106
blast CAE73361 Hypothetical protein CBG20794 [Caenorhabditis briggsae] 3.0E-96
Sequence
Target Sequence 
>C. ELEGANS:186315_AT
ctctttcacttcgccgagtgctaaacagcggtttccacccgtttcaagtcatcccgaagc
ccgatgtgtggatgaaacgagaacggctcaatcgattcacggcgtggcaatacgcatcag
aacggagcacagtaaagggagcctatcggaaagaagacaaaatcttcgcgtatttaaata
tgcagcggcaagatgagcgaaatctcgagaaattccatgccgaagaacgagttcgaaccg
cgttggaggaacacgacatggaatactcgaaatttaaatcgattttatcgcaatctcaca
ttctgctcgacaatatttgcctatcacagctagcgatttacgagccaagatccttcagaa
gcctcgtcgcgttcgccaaagaactcgctcgtcaggagggcatgaacgttattccagatg
atgccgagttttcctacgatgtccacgtggacaacaagtcagtgctcaggaaacctctgc
cacgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTTCACTTCGCCGAGTGCTAAA 187 229 29 Antisense
TCATCCCGAAGCCCGATGTGTGGAT 505 621 77 Antisense
GCTCAATCGATTCACGGCGTGGCAA 614 301 114 Antisense
GAACGAGTTCGAACCGCGTTGGAGG 102 345 253 Antisense
TATCGCAATCTCACATTCTGCTCGA 256 657 314 Antisense
ATATTTGCCTATCACAGCTAGCGAT 576 19 341 Antisense
CAAGATCCTTCAGAAGCCTCGTCGC 266 185 374 Antisense
TCGTCGCGTTCGCCAAAGAACTCGC 577 603 392 Antisense
AAGAACTCGCTCGTCAGGAGGGCAT 167 153 407 Antisense
GATGATGCCGAGTTTTCCTACGATG 471 411 445 Antisense
TGCTCAGGAAACCTCTGCCACGAGC 83 579 491 Antisense
Sequence Source Affymetrix Proprietary Database