[Home] | [Total List]

[186314_s_at]

Description B0432.10 /REP_DB=WormBase Gene ID /WP=CE07748 /TR=P90991 /GB=AAB37895.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 95      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 92      6grp_total > 75      4grp_total > 08      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 141.8
(-3)
P 		172.9
(-1.5)
P 		158.4
(-2.2)
P 		268.5
(3)
P 		127
B 150.1
(-3)
P 		193.1
(-1.7)
P 		194
(-1.6)
P 		342.9
(3)
P 		193
C 176.4
(-2.4)
P 		149.5
(-3)
P 		228.4
(-1.1)
P 		402.6
(3)
P 		253
avr 156.1
(-3) 		171.8
(-2.5) 		193.6
(-1.8) 		338
(3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 412
1 2 3 4 5 6 range
A 170
(-3)
P 		189
(-2.4)
P 		314.3
(1.3)
P 		278.9
(0.3)
P 		287.8
(0.5)
P 		369.5
(3)
P 		200
B 122.5
(-3)
P 		191.4
(-1.7)
P 		350.2
(1.2)
P 		339.8
(1)
P 		311.8
(0.5)
P 		447.4
(3)
P 		325
C 127.6
(-3)
P 		179.6
(-2.2)
P 		132.1
(-2.9)
P 		340.3
(0.1)
P 		282.4
(-0.7)
P 		534.4
(3)
P 		407
avr 140
(-3) 		186.7
(-2.1) 		265.5
(-0.6) 		319.7
(0.5) 		294
(-0) 		450.4
(3) 		310
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 51.6
(3)
P 		37.5
(-3)
P 		41.4
(-1.3)
P 		39.3
(-2.2)
P 		14
B 47.9
(-2.4)
P 		47.7
(-2.4)
P 		45
(-3)
P 		73.1
(3)
P 		28
C 58.4
(-0.5)
P 		43
(-3)
P 		79.6
(3)
P 		67.9
(1.1)
P 		37
avr 52.6
(0.4) 		42.7
(-3) 		55.3
(1.3) 		60.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 31.3
(-3)
P 		67.2
(0.7)
P 		68.5
(0.8)
P 		70.7
(1)
P 		86.8
(2.7)
P 		90
(3)
P 		59
B 42.6
(-3)
P 		63.7
(-2)
P 		85
(-1)
P 		90
(-0.7)
P 		126.7
(1.1)
P 		166.8
(3)
P 		124
C 47.3
(-2.4)
P 		54.8
(-2.1)
P 		33.6
(-3)
P 		68.4
(-1.6)
P 		91.4
(-0.6)
P 		178.9
(3)
P 		145
avr 40.4
(-3) 		61.9
(-1.8) 		62.4
(-1.7) 		76.4
(-0.9) 		101.6
(0.5) 		145.2
(3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186314_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5760
Sequence Type Exemplar sequence
Representative Public ID B0432.10 NCBI
Target Description B0432.10 /REP_DB=WormBase Gene ID /WP=CE07748 /TR=P90991 /GB=AAB37895.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061292(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061292 NCBI Caenorhabditis elegans B0432.10 (B0432.10) mRNA, complete cds. 11/11 None
SNAP00000033638 ENSEMBL cdna:SNAP chromosome:CEL140:II:276860:285216:-1 10/11 None
GENEFINDER00000033647 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:283915:285678:-1 11/11 None
B0432.10 ENSEMBL cdna:known chromosome:CEL140:II:283915:286223:-1 gene:B0432.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:283914-285678(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0432.10
Entrez Gene 173413 Entrez gene
SwissProt P90991 EMBL-EBI
WormBase CE07748 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37895 Hypothetical protein B0432.10 [Caenorhabditis elegans] ref|NP_493693.1| B0432.10 [Caenorhabditis elegans] 1.0E-173
blast CAE62840 Hypothetical protein CBG07019 [Caenorhabditis briggsae] 1.0E-143
blast AAB37894 Hypothetical protein B0432.8 [Caenorhabditis elegans] ref|NP_493691.2| B0432.8 [Caenorhabditis elegans] 1.0E-141
blast AAB37893 Hypothetical protein B0432.13 [Caenorhabditis elegans] ref|NP_740965.1| B0432.13 [Caenorhabditis elegans] 1.0E-110
blast AAB37895 Hypothetical protein B0432.10 [Caenorhabditis elegans] ref|NP_493693.1| B0432.10 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR001130 EMBL-EBI TatD-related deoxyribonuclease 3.2E-62
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.7E-12
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 1.9E-13
Sequence
Target Sequence 
>C. ELEGANS:186314_S_AT
aatgctatgcgagttggatctctcaaaaccttcaggctcccggcaatttgtggttcaaaa
ttttgaaaatcagctaaaagacggtcgaatcttctacgtaaatctcgcaaaactcgggca
aatcggcggagatttattcaaaaaatggcagactgtggagaatgttcaacagcttagttt
agccaacgaaacaatggaaaatcgaatgattgaagttttgatggaggctacggcgaaata
tgatgatattgttgtcattagacacagttttcatagactaatccaattggctcaaacgta
ccgaatgcacaaattgatgcgtgtaattgaggaaaacttgtcagaaacgaagctcatgaa
ttgggatgaaaagattctgttggctctacaatatagaatgagccaactttatgttcaagt
tcagcggaagtatcttttgacgccgtggaacatactttgcaggatacaacgcctctacct
gtcaaattatgctgcaaaatcgggaaatgcctcaaatccgtacgatatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTATGCGAGTTGGATCTCTCA 390 165 336 Antisense
GGATCTCTCAAAACCTTCAGGCTCC 117 513 351 Antisense
GCTCCCGGCAATTTGTGGTTCAAAA 388 299 371 Antisense
GAATCTTCTACGTAAATCTCGCAAA 155 329 422 Antisense
ATCTCGCAAAACTCGGGCAAATCGG 265 31 437 Antisense
ATTGGCTCAAACGTACCGAATGCAC 535 3 621 Antisense
GCGGAAGTATCTTTTGACGCCGTGG 42 295 759 Antisense
GACGCCGTGGAACATACTTTGCAGG 479 381 774 Antisense
CTTTGCAGGATACAACGCCTCTACC 407 219 790 Antisense
ACGCCTCTACCTGTCAAATTATGCT 25 91 804 Antisense
AATGCCTCAAATCCGTACGATATGA 682 165 841 Antisense
Sequence Source Affymetrix Proprietary Database