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[186312_at]

Description Y48E1B.12 /REP_DB=WormBase Gene ID /WP=CE14874 /TR=O45952 /GB=CAB07696.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 38      6grp_total > 99      4grp_total > 41      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 198.7
(-3)
P 		338.7
(1.2)
P 		397.7
(3)
P 		289.8
(-0.3)
P 		199
B 185.1
(-3)
A 		319.4
(3)
P 		318.9
(3)
P 		272
(0.9)
P 		134
C 289.5
(0.3)
P 		302.6
(1.7)
P 		257.9
(-3)
P 		315.1
(3)
P 		57
avr 224.4
(-3) 		320.2
(2.7) 		324.8
(3) 		292.3
(1.1) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 449
1 2 3 4 5 6 range
A 224.6
(-1.8)
A 		131.6
(-3)
A 		148.4
(-2.8)
P 		208.4
(-2)
P 		443.8
(1.2)
P 		581
(3)
P 		449
B 220.7
(-2)
P 		280.2
(-1)
M 		165.3
(-3)
A 		187.4
(-2.6)
P 		456.9
(2.2)
P 		502.3
(3)
P 		337
C 237.8
(-1.6)
P 		176.9
(-2.5)
A 		138.6
(-3)
A 		237.1
(-1.6)
P 		561.2
(3)
P 		447.4
(1.4)
P 		423
avr 227.7
(-1.7) 		196.2
(-2.2) 		150.8
(-3) 		211
(-2) 		487.3
(2.6) 		510.2
(3) 		359
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 72.3
(-0.1)
P 		73.5
(0)
P 		104
(3)
P 		42.4
(-3)
P 		62
B 59
(-2.7)
A 		78.9
(3)
P 		73.9
(1.6)
P 		58
(-3)
P 		21
C 95.8
(3)
P 		87
(1.8)
P 		89.9
(2.2)
P 		53.1
(-3)
P 		43
avr 75.7
(0.9) 		79.8
(1.5) 		89.3
(3) 		51.2
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 41.4
(-2.5)
A 		46.8
(-2.2)
A 		32.3
(-3)
P 		52.9
(-1.9)
P 		133.9
(2.6)
P 		141.4
(3)
P 		109
B 76.8
(-1.5)
P 		93.3
(-0.8)
M 		40.1
(-3)
A 		49.6
(-2.6)
P 		185.6
(2.9)
P 		187.3
(3)
P 		147
C 88.2
(-0.8)
P 		54
(-2.2)
A 		35.3
(-3)
A 		47.7
(-2.5)
P 		181.6
(3)
P 		149.8
(1.7)
P 		146
avr 68.8
(-1.5) 		64.7
(-1.7) 		35.9
(-3) 		50.1
(-2.4) 		167
(3) 		159.5
(2.7) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186312_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3906
Sequence Type Exemplar sequence
Representative Public ID Y48E1B.12 NCBI
Target Description Y48E1B.12 /REP_DB=WormBase Gene ID /WP=CE14874 /TR=O45952 /GB=CAB07696.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064455(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064455 NCBI Caenorhabditis elegans Chromosome Segregation and Cytokinesis defective family member (csc-1) (csc-1) mRNA, complete cds. 11/11 None
SNAP00000010063 ENSEMBL cdna:SNAP chromosome:CEL140:II:13596852:13599798:1 11/11 None
GENEFINDER00000010074 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13596852:13597770:1 11/11 None
Y48E1B.12 ENSEMBL cdna:known chromosome:CEL140:II:13596846:13597899:1 gene:Y48E1B.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13596848-13597767(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol csc-1
Ensembl Y48E1B.12
Entrez Gene 175006 Entrez gene
SwissProt O45952 EMBL-EBI
WormBase CE14874 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07696 Hypothetical protein Y48E1B.12 [Caenorhabditis elegans] ref|NP_496856.1| Chromosome Segregation and Cytokinesis defective family member (csc-1) [Caenorhabditis elegans] 1.0E-119
blast CAB07696 Hypothetical protein Y48E1B.12 [Caenorhabditis elegans] ref|NP_496856.1| Chromosome Segregation and Cytokinesis defective family member (csc-1) [Caenorhabditis elegans] 1.0E-117
blast CAE73256 Hypothetical protein CBG20672 [Caenorhabditis briggsae] 1.0E-37
blast CAE73256 Hypothetical protein CBG20672 [Caenorhabditis briggsae] 3.0E-36
blast NP_703609 hypothetical protein [Plasmodium falciparum 3D7] emb|CAD51629.1| hypothetical protein [Plasmodium falciparum 3D7] 6.0E-14
Sequence
Target Sequence 
>C. ELEGANS:186312_AT
ggctgaatccgaccggatcatcgccacaatcaagccaaaatacagggatatgccgatcat
ggagtttctggcatcgccaccggatgatttctacattgaatccggcgaggaggaggagga
aggagaagcggcggtggcggttaagcaggagcttccttccgagcctgacatggaaatcga
cgacgcggcggcggcgcaaaagacgagcattccgattggccagaactccggccggaacac
ggtgcaggtcaagcaggagcctgaaatcgacgacgatgcggcgcatgagacgagcattcc
gattgctccatctggccagaactccggcaggaacacggcggccgacgagcaccgccgcaa
cgagatcataacgccagctggacaagtgctcccactgccaacacttcaaccggaaaagcc
attccgtgctccacacgttgacgaggaaatcgccttctcggtgaacggatcgccactggt
cttggctggaagaactactgctactgctgctggcaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGAATCCGACCGGATCATCGCC 187 539 141 Antisense
ATCATGGAGTTTCTGGCATCGCCAC 309 29 196 Antisense
ATCGCCACCGGATGATTTCTACATT 343 37 213 Antisense
AAGACGAGCATTCCGATTGGCCAGA 270 153 340 Antisense
GCAGGAGCCTGAAATCGACGACGAT 25 311 393 Antisense
ATCTGGCCAGAACTCCGGCAGGAAC 671 33 450 Antisense
ACCGCCGCAACGAGATCATAACGCC 486 89 491 Antisense
ATAACGCCAGCTGGACAAGTGCTCC 408 25 508 Antisense
TCCGTGCTCCACACGTTGACGAGGA 228 593 563 Antisense
TGAACGGATCGCCACTGGTCTTGGC 404 573 602 Antisense
CTACTGCTACTGCTGCTGGCAAGGA 18 227 635 Antisense
Sequence Source Affymetrix Proprietary Database