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[186311_s_at]

Description Y57G7A.2 /REP_DB=WormBase Gene ID /WP=CE19631 /TR=O76627 /GB=AAC26297.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.6
(3)
A 		2.2
(-3)
A 		2.2
(-3)
A 		2.3
(-1.5)
A 		0
B 1
(-3)
A 		1.8
(-1.5)
A 		1.5
(-2.1)
A 		4.3
(3)
A 		3
C 1.8
(-2.5)
A 		2.3
(-1.9)
A 		1.3
(-3)
A 		7
(3)
A 		6
avr 1.8
(-2.8) 		2.1
(-2.1) 		1.7
(-3) 		4.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 4.5
(2)
A 		2.7
(-0.5)
A 		5.2
(3)
A 		3.1
(0.1)
A 		0.9
(-3)
A 		5.2
(3)
A 		4
B 1.6
(-2.9)
A 		1.2
(-3)
A 		1.4
(-2.9)
A 		1.8
(-2.8)
A 		3.7
(-2.1)
A 		18.2
(3)
A 		17
C 0.8
(-3)
A 		2.1
(-2.6)
A 		1
(-2.9)
A 		1.9
(-2.7)
A 		3.1
(-2.3)
A 		20.4
(3)
A 		20
avr 2.3
(-2.9) 		2
(-3) 		2.5
(-2.8) 		2.3
(-2.9) 		2.6
(-2.7) 		14.6
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.9
(3)
A 		0.5
(-1)
A 		0.6
(-0)
A 		0.3
(-3)
A 		1
B 0.3
(-3)
A 		0.4
(-2)
A 		0.3
(-3)
A 		0.9
(3)
A 		1
C 0.6
(-2.1)
A 		0.7
(-1.3)
A 		0.5
(-3)
A 		1.2
(3)
A 		1
avr 0.6
(-1) 		0.5
(-3) 		0.5
(-3) 		0.8
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.8
(0)
A 		1
(1.2)
A 		1.1
(1.8)
A 		0.8
(0)
A 		0.3
(-3)
A 		1.3
(3)
A 		1
B 0.6
(-2.7)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		1.5
(-1.9)
A 		6.8
(3)
A 		7
C 0.3
(-3)
A 		0.7
(-2.6)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		1
(-2.4)
A 		6.8
(3)
A 		7
avr 0.6
(-3) 		0.7
(-2.9) 		0.6
(-3) 		0.6
(-3) 		0.9
(-2.6) 		5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186311_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5788
Sequence Type Exemplar sequence
Representative Public ID Y57G7A.2 NCBI
Target Description Y57G7A.2 /REP_DB=WormBase Gene ID /WP=CE19631 /TR=O76627 /GB=AAC26297.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061541 NCBI Caenorhabditis elegans Y57G7A.2 (Y57G7A.2) mRNA, complete cds. 11/11 A 
SNAP00000014158 ENSEMBL cdna:SNAP chromosome:CEL140:II:1296091:1298841:1 11/11 None
GENEFINDER00000014170 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1296091:1296815:1 11/11 None
Y57G7A.2 ENSEMBL cdna:known chromosome:CEL140:II:1296082:1296752:1 gene:Y57G7A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1296089-1296751(+) 95.51 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G7A.2
Entrez Gene 173508 Entrez gene
SwissProt O76627 EMBL-EBI
WormBase CE19631 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26297 Hypothetical protein Y57G7A.2 [Caenorhabditis elegans] ref|NP_493942.1| Y57G7A.2 [Caenorhabditis elegans] 1.0E-86
blast AAC26297 Hypothetical protein Y57G7A.2 [Caenorhabditis elegans] ref|NP_493942.1| Y57G7A.2 [Caenorhabditis elegans] 3.0E-81
blast AAC26296 Hypothetical protein Y57G7A.1 [Caenorhabditis elegans] ref|NP_493943.1| Y57G7A.1 [Caenorhabditis elegans] 1.0E-27
blast CAE62984 Hypothetical protein CBG07208 [Caenorhabditis briggsae] 1.0E-22
Sequence
Target Sequence 
>C. ELEGANS:186311_S_AT
ctcctggaacgagcaagtagctgtgaagaagccaagcagctcgcagagcagaaaaggagg
aaaaaataaagaagaagcaagggaaaaaaaccatcagaaaaacaaagctctcttggaaat
gctaaatcaagtggatccggccgtaattgatgctgaaattgaagaacagaaagaaaagca
aaggctgaggaagaacagaggtcggtacgatccaattggagcacacggagcacaacaagg
cactcgaggtgtacagaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTGGAACGAGCAAGTAGCTGTG 235 235 237 Antisense
GCAAGTAGCTGTGAAGAAGCCAAGC 482 247 249 Antisense
GAAGCCAAGCAGCTCGCAGAGCAGA 624 343 264 Antisense
AACAAAGCTCTCTTGGAAATGCTAA 562 133 337 Antisense
GCTAAATCAAGTGGATCCGGCCGTA 661 301 357 Antisense
GGATCCGGCCGTAATTGATGCTGAA 315 513 369 Antisense
GAGGAAGAACAGAGGTCGGTACGAT 389 335 423 Antisense
GAGGTCGGTACGATCCAATTGGAGC 57 395 434 Antisense
CAATTGGAGCACACGGAGCACAACA 206 175 449 Antisense
GAGCACAACAAGGCACTCGAGGTGT 702 389 464 Antisense
AAGGCACTCGAGGTGTACAGAATGA 283 161 473 Antisense
Sequence Source Affymetrix Proprietary Database