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[186310_at]

Description Y57G7A.2 /REP_DB=WormBase Gene ID /WP=CE19631 /TR=O76627 /GB=AAC26297.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 25.4
(3)
A 		23.1
(2.3)
A 		6.6
(-3)
A 		8.4
(-2.4)
A 		19
B 20.8
(0.1)
A 		38
(3)
A 		2.9
(-3)
A 		19.3
(-0.2)
A 		35
C 5.1
(-3)
A 		23.2
(-0.6)
A 		20
(-1)
A 		50
(3)
A 		45
avr 17.1
(-0.6) 		28.1
(3) 		9.8
(-3) 		25.9
(2.3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 29.8
(3)
A 		10.2
(-1.5)
A 		10.6
(-1.4)
A 		3.6
(-3)
A 		7.9
(-2)
A 		4.1
(-2.9)
A 		26
B 5.5
(-3)
A 		30.5
(2.4)
A 		11.5
(-1.7)
A 		8
(-2.5)
A 		9.5
(-2.1)
A 		33.5
(3)
A 		28
C 5.6
(-2.8)
A 		28.4
(3)
A 		13.5
(-0.8)
A 		4.9
(-3)
A 		27
(2.6)
A 		22.7
(1.5)
A 		24
avr 13.6
(-0.2) 		23
(3) 		11.9
(-0.8) 		5.5
(-3) 		14.8
(0.2) 		20.1
(2) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.3
(3)
A 		5
(-0.2)
A 		1.7
(-2.6)
A 		1.2
(-3)
A 		8
B 6.6
(1.1)
A 		9.4
(3)
A 		0.7
(-3)
A 		4.1
(-0.7)
A 		9
C 1.7
(-3)
A 		6.7
(1.5)
A 		7
(1.7)
A 		8.4
(3)
A 		7
avr 5.9
(1.3) 		7
(3) 		3.1
(-3) 		4.6
(-0.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.5
(3)
A 		3.6
(0.5)
A 		2.3
(-1.2)
A 		0.9
(-3)
A 		2.4
(-1)
A 		1
(-2.9)
A 		5
B 1.9
(-3)
A 		10.2
(1.7)
A 		2.8
(-2.5)
A 		2.1
(-2.9)
A 		3.9
(-1.9)
A 		12.5
(3)
A 		11
C 2.1
(-2.2)
A 		8.7
(2.9)
A 		3.4
(-1.2)
A 		1
(-3)
A 		8.8
(3)
A 		7.6
(2.1)
A 		8
avr 3.2
(-1.2) 		7.5
(3) 		2.8
(-1.5) 		1.3
(-3) 		5
(0.6) 		7
(2.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5788
Sequence Type Exemplar sequence
Representative Public ID Y57G7A.2 NCBI
Target Description Y57G7A.2 /REP_DB=WormBase Gene ID /WP=CE19631 /TR=O76627 /GB=AAC26297.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061541 NCBI Caenorhabditis elegans Y57G7A.2 (Y57G7A.2) mRNA, complete cds. 11/11 A 
SNAP00000014158 ENSEMBL cdna:SNAP chromosome:CEL140:II:1296091:1298841:1 11/11 None
GENEFINDER00000014170 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1296091:1296815:1 11/11 None
Y57G7A.2 ENSEMBL cdna:known chromosome:CEL140:II:1296082:1296752:1 gene:Y57G7A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1296089-1296751(+) 95.51 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G7A.2
Entrez Gene 173508 Entrez gene
SwissProt O76627 EMBL-EBI
WormBase CE19631 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26297 Hypothetical protein Y57G7A.2 [Caenorhabditis elegans] ref|NP_493942.1| Y57G7A.2 [Caenorhabditis elegans] 1.0E-86
blast AAC26297 Hypothetical protein Y57G7A.2 [Caenorhabditis elegans] ref|NP_493942.1| Y57G7A.2 [Caenorhabditis elegans] 3.0E-81
blast AAC26296 Hypothetical protein Y57G7A.1 [Caenorhabditis elegans] ref|NP_493943.1| Y57G7A.1 [Caenorhabditis elegans] 1.0E-27
blast CAE62984 Hypothetical protein CBG07208 [Caenorhabditis briggsae] 1.0E-22
Sequence
Target Sequence 
>C. ELEGANS:186310_AT
tgctccacgacgagcaggtcttcgcggagtttatggtgccaaatgcccatactacaccaa
atctgtggaggatccagcagcaaaatcaggagaatcagattccccagaatttccagcatt
tggattttcagtattttcagtaccagaaccagaagcaggaggtggtgcatggagctcact
gtatggggactgttgggagctcctggaacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCACGACGAGCAGGTCTTCGC 671 577 38 Antisense
GGTCTTCGCGGAGTTTATGGTGCCA 525 503 54 Antisense
GGTGCCAAATGCCCATACTACACCA 78 503 72 Antisense
ACTACACCAAATCTGTGGAGGATCC 85 101 88 Antisense
GTGGAGGATCCAGCAGCAAAATCAG 69 491 102 Antisense
GAGAATCAGATTCCCCAGAATTTCC 265 391 127 Antisense
TTCCCCAGAATTTCCAGCATTTGGA 25 699 137 Antisense
CAGTATTTTCAGTACCAGAACCAGA 281 207 166 Antisense
GGAGGTGGTGCATGGAGCTCACTGT 235 517 195 Antisense
GGAGCTCACTGTATGGGGACTGTTG 328 521 208 Antisense
GACTGTTGGGAGCTCCTGGAACGAG 659 375 225 Antisense
Sequence Source Affymetrix Proprietary Database