[Home] | [Total List]

[186309_s_at]

Description T05H4.15 /REP_DB=WormBase Gene ID /WP=CE13297 /TR=O16523 /GB=AAB66020.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 61      6grp_highest_nonorm > 90      6grp_total > 62      4grp_total > 46      6grp_highest_sub > 03      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 149.7
(3)
P 		114.6
(0.8)
M 		55
(-3)
A 		103.6
(0.1)
A 		95
B 213.3
(3)
P 		116.6
(-1)
A 		71.6
(-2.8)
A 		67.7
(-3)
P 		146
C 156.8
(3)
P 		115.8
(-0)
P 		75
(-3)
A 		102.9
(-1)
A 		82
avr 173.3
(3) 		115.7
(-0.3) 		67.2
(-3) 		91.4
(-1.6) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 146.7
(-0.6)
P 		121.1
(-1.9)
P 		205.7
(2.3)
P 		220.3
(3)
P 		99
(-3)
P 		119.5
(-2)
P 		121
B 75.4
(-3)
P 		160.3
(0.1)
P 		237.7
(3)
P 		169.1
(0.5)
P 		145.1
(-0.4)
P 		128.5
(-1)
P 		162
C 106.8
(-2.2)
P 		189.4
(0.9)
P 		187.1
(0.8)
P 		243.6
(3)
P 		87.8
(-3)
P 		86.9
(-3)
P 		157
avr 109.6
(-3) 		156.9
(-0.2) 		210.2
(3) 		211
(3) 		110.6
(-2.9) 		111.6
(-2.9) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 54.5
(3)
P 		24.9
(-1.4)
M 		14.4
(-3)
A 		15.2
(-2.9)
A 		40
B 68
(3)
P 		28.8
(-1.4)
A 		16.6
(-2.8)
A 		14.4
(-3)
P 		54
C 51.9
(3)
P 		33.3
(-0.2)
P 		26.1
(-1.5)
A 		17.4
(-3)
A 		35
avr 58.1
(3) 		29
(-1.1) 		19
(-2.5) 		15.7
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 27
(-3)
P 		43.1
(0.3)
P 		44.8
(0.7)
P 		55.9
(3)
P 		29.9
(-2.4)
P 		29.1
(-2.6)
P 		29
B 26.2
(-3)
P 		53.4
(2)
P 		57.7
(2.8)
P 		44.8
(0.4)
P 		58.9
(3)
P 		47.9
(1)
P 		33
C 39.6
(-0.7)
P 		57.8
(3)
P 		47.6
(0.9)
P 		49
(1.2)
P 		28.4
(-3)
P 		29.1
(-2.9)
P 		29
avr 30.9
(-3) 		51.4
(3) 		50
(2.6) 		49.9
(2.6) 		39.1
(-0.6) 		35.4
(-1.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186309_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11806
Sequence Type Exemplar sequence
Representative Public ID T05H4.15 NCBI
Target Description T05H4.15 /REP_DB=WormBase Gene ID /WP=CE13297 /TR=O16523 /GB=AAB66020.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072239(11), NM_001028935(11), NM_182374(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072239 NCBI Caenorhabditis elegans T05H4.15a (T05H4.15) mRNA, complete cds. 11/11 None
NM_001028935 NCBI Caenorhabditis elegans T05H4.15c (T05H4.15) mRNA, complete cds. 11/11 None
NM_182374 NCBI Caenorhabditis elegans T05H4.15b (T05H4.15) mRNA, complete cds. 11/11 None
SNAP00000040311 ENSEMBL cdna:SNAP chromosome:CEL140:V:6442883:6444292:-1 11/11 None
GENEFINDER00000040326 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6442883:6444292:-1 11/11 None
T05H4.15a ENSEMBL cdna:known chromosome:CEL140:V:6442796:6444305:-1 gene:T05H4.15 11/11 None
T05H4.15b.2 ENSEMBL cdna:known chromosome:CEL140:V:6442877:6444305:-1 gene:T05H4.15 11/11 None
T05H4.15b.1 ENSEMBL cdna:known chromosome:CEL140:V:6442893:6444305:-1 gene:T05H4.15 11/11 None
T05H4.15b.3 ENSEMBL cdna:known chromosome:CEL140:V:6443169:6444230:-1 gene:T05H4.15 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6442882-6444292(-) 100.0 100.0
Public Domain and Genome References
Ensembl T05H4.15
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504640 T05H4.15a [Caenorhabditis elegans] gb|AAB66020.1| Hypothetical protein T05H4.15a [Caenorhabditis elegans] 0.0
blast NP_001024106 T05H4.15c [Caenorhabditis elegans] gb|AAX88811.1| Hypothetical protein T05H4.15c [Caenorhabditis elegans] 0.0
blast NP_504159 Y45G5AM.3 [Caenorhabditis elegans] gb|AAG23365.1| Hypothetical protein Y45G5AM.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.8E-5
Sequence
Target Sequence 
>C. ELEGANS:186309_S_AT
tctaccatgttgcaaggatcttcgaattgctgcagacgatcttgatgcatttcgctggtg
gctacaaaaagttccagaacagctagattcgcttcaattgctaacacacgagcaagaaag
aaacacattaacgcttcctggcgattttgtgggtttaccgcaaatcatgactgttccgag
cctctacttctggtgtcgagctgcattttctgatgaacaatttctcgagttaaaggcgaa
gtctatgagctttaatgctgtaaatattactgataatggaataaatcagttcctgaagaa
ttggatcaatggaaaaggagttcctggattcagtcgagctctgctatggagtaggcggca
agcagataaacctgtactgattcgaggatttgaagttagacagtgggagggggattttga
aagagaagcatctggtttctgtggagattttgagcgagtttgtggtcgtggagattgtct
acaagtttatagtttaattgatccttatgaaagcctaactctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACCATGTTGCAAGGATCTTCGA 468 613 630 Antisense
GGATCTTCGAATTGCTGCAGACGAT 309 511 645 Antisense
GATCTTGATGCATTTCGCTGGTGGC 260 419 667 Antisense
GATTCGCTTCAATTGCTAACACACG 253 433 715 Antisense
AGAAACACATTAACGCTTCCTGGCG 90 73 748 Antisense
CGCTTCCTGGCGATTTTGTGGGTTT 290 255 761 Antisense
TGTGGGTTTACCGCAAATCATGACT 466 547 777 Antisense
TCTGGTGTCGAGCTGCATTTTCTGA 86 609 818 Antisense
GGAGTTCCTGGATTCAGTCGAGCTC 124 519 946 Antisense
CGAGCTCTGCTATGGAGTAGGCGGC 385 251 964 Antisense
TGATCCTTATGAAAGCCTAACTCTC 238 565 1128 Antisense
Sequence Source Affymetrix Proprietary Database