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[186307_at]

Description Y39A1A.13 /REP_DB=WormBase Gene ID /WP=CE19132 /TR=Q9XX16 /GB=CAA21024.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 20      4grp_high_8_8 > 23      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 0      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 165.6
(-3)
P 		181.7
(-0.7)
P 		195.5
(1.3)
P 		207.4
(3)
P 		42
B 188.1
(0.9)
P 		136.9
(-3)
P 		215.2
(3)
P 		173.5
(-0.2)
P 		78
C 175.5
(-3)
P 		181.2
(-2.6)
P 		209.1
(-0.4)
P 		253.7
(3)
P 		78
avr 176.4
(-1.7) 		166.6
(-3) 		206.6
(2.3) 		211.5
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 220.3
(-1.1)
P 		150.9
(-2.7)
P 		137
(-3)
P 		166.9
(-2.3)
P 		259.3
(-0.2)
P 		394.5
(3)
P 		258
B 177.5
(-2.8)
P 		192.7
(-2.5)
P 		169.6
(-3)
P 		239.6
(-1.6)
P 		319.6
(0)
P 		465.1
(3)
P 		296
C 179.1
(-2.8)
P 		166.5
(-3)
P 		169.9
(-2.9)
P 		233.6
(-1.8)
P 		249.5
(-1.5)
P 		493.1
(3)
P 		327
avr 192.3
(-2.3) 		170
(-2.8) 		158.8
(-3) 		213.4
(-1.9) 		276.1
(-0.6) 		450.9
(3) 		292
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 60.3
(3)
P 		39.4
(-1.2)
P 		51.1
(1.2)
P 		30.4
(-3)
P 		30
B 60
(3)
P 		33.8
(-3)
P 		49.9
(0.7)
P 		37
(-2.3)
P 		26
C 58.1
(0)
P 		52.1
(-1.1)
P 		72.9
(3)
P 		42.8
(-3)
P 		30
avr 59.5
(3) 		41.8
(-1.7) 		58
(2.6) 		36.7
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 40.6
(-2)
P 		53.7
(-0.8)
P 		29.8
(-3)
P 		42.3
(-1.9)
P 		78.2
(1.4)
P 		96
(3)
P 		66
B 61.8
(-2.1)
P 		64.1
(-2)
P 		41.2
(-3)
P 		63.5
(-2)
P 		129.8
(1)
P 		173.4
(3)
P 		132
C 66.4
(-1.9)
P 		50.8
(-2.6)
P 		43.2
(-3)
P 		47
(-2.8)
P 		80.7
(-1.2)
P 		165.1
(3)
P 		122
avr 56.3
(-2) 		56.2
(-2) 		38.1
(-3) 		50.9
(-2.3) 		96.2
(0.3) 		144.8
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186307_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8046
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.13 NCBI
Target Description Y39A1A.13 /REP_DB=WormBase Gene ID /WP=CE19132 /TR=Q9XX16 /GB=CAA21024.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066947 NCBI Caenorhabditis elegans Y39A1A.13 (Y39A1A.13) mRNA, complete cds. 11/11 None
SNAP00000012915 ENSEMBL cdna:SNAP chromosome:CEL140:III:10646048:10650428:1 11/11 None
GENEFINDER00000012932 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10646048:10648955:1 11/11 None
Y39A1A.13 ENSEMBL cdna:known chromosome:CEL140:III:10646047:10648690:1 gene:Y39A1A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10646043-10648686(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A1A.13
Entrez Gene 176487 Entrez gene
SwissProt Q9XX16 EMBL-EBI
WormBase CE19132 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21024 Hypothetical protein Y39A1A.13 [Caenorhabditis elegans] ref|NP_499348.1| Y39A1A.13 [Caenorhabditis elegans] 0.0
blast CAE71425 Hypothetical protein CBG18336 [Caenorhabditis briggsae] 1.0E-137
blast CAA21025 Hypothetical protein Y39A1A.14 [Caenorhabditis elegans] ref|NP_499349.1| Y39A1A.14 [Caenorhabditis elegans] sp|Q9XX15|NEP1_CAEEL Probable ribosome biogenesis protein nep-1 1.0E-128
blast CAE71426 Hypothetical protein CBG18337 [Caenorhabditis briggsae] 4.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR005304 EMBL-EBI Suppressor Mra1 2.9E-101
Sequence
Target Sequence 
>C. ELEGANS:186307_AT
tgattcctggcggctcaaaatgcgaagaatccgagtgctataagagatttgtgaagaatt
tgaactttcagacatggcttaggccggtttttgagacaagtcactacgtcgttctgaaac
aattggccgcgcaattcctgatgcttttcggttactattgtgacgtagaagacacgtgga
aacccgaggaaatcagcaaacagattcgtaaaattgtcgagacgacttctccctcgtata
atggaaaattgttgattttaaaagatcaaacagttcgagcacaatgcgtttttctttgtg
tctggagacttgtgcagaataaagagtcagatggaccacttttggcgccaaaaacttcgt
atcgaaacgtttttctagaattcaaaaaactcgttaatcaacactatcctccactgaacg
tgagcagtgatgtctacgtattccgagaattggatcatctcgttaaaatgggaattttga
aggcagacgagagcacaaatgtgacaaatacctcgtttcgaaaagtttggcttcatatca
atgataaaattgtggaggactcgatctcgaagttgcagctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTCCTGGCGGCTCAAAATGCGA 442 563 554 Antisense
GAACTTTCAGACATGGCTTAGGCCG 102 349 615 Antisense
AACAATTGGCCGCGCAATTCCTGAT 158 135 671 Antisense
ATTCCTGATGCTTTTCGGTTACTAT 181 9 687 Antisense
AAATTGTCGAGACGACTTCTCCCTC 545 115 764 Antisense
AATGCGTTTTTCTTTGTGTCTGGAG 38 167 836 Antisense
TCAGATGGACCACTTTTGGCGCCAA 615 601 880 Antisense
AACTCGTTAATCAACACTATCCTCC 463 141 941 Antisense
ACTATCCTCCACTGAACGTGAGCAG 700 101 956 Antisense
GAGCAGTGATGTCTACGTATTCCGA 362 389 975 Antisense
GACTCGATCTCGAAGTTGCAGCTCC 9 375 1111 Antisense
Sequence Source Affymetrix Proprietary Database