[Home] | [Total List]

[186306_at]

Description Y49F6C.3 /REP_DB=WormBase Gene ID /WP=CE22267 /TR=Q9TYJ0 /GB=AAD12865.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 39      6grp_cgc > 37      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.3
(3)
A 		3.9
(-2.5)
A 		2.6
(-3)
A 		3.2
(-2.8)
A 		15
B 6.3
(3)
A 		3.8
(-0.3)
A 		1.7
(-3)
A 		2.5
(-2)
A 		5
C 6.6
(3)
A 		1.5
(-3)
A 		1.5
(-3)
A 		6.2
(2.5)
A 		5
avr 10.1
(3) 		3.1
(-2.1) 		1.9
(-3) 		4
(-1.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 4.6
(-1.5)
A 		6.2
(-0.6)
A 		12.4
(2.9)
A 		6.5
(-0.4)
A 		1.9
(-3)
A 		12.6
(3)
A 		11
B 6
(-1.9)
A 		11.8
(-0.5)
A 		4.3
(-2.3)
A 		26.2
(3)
A 		1.4
(-3)
A 		5.8
(-1.9)
A 		25
C 7.1
(-2.3)
A 		7.3
(-2.2)
A 		3.7
(-3)
A 		5.8
(-2.5)
A 		5.9
(-2.5)
A 		30.9
(3)
A 		27
avr 5.9
(-1.7) 		8.4
(-0.6) 		6.8
(-1.3) 		12.8
(1.4) 		3.1
(-3) 		16.4
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.3
(3)
A 		0.8
(-2.7)
A 		0.7
(-2.8)
A 		0.5
(-3)
A 		6
B 2
(3)
A 		0.9
(-1.1)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		2
C 2.2
(3)
A 		0.4
(-3)
A 		0.5
(-2.7)
A 		1
(-1)
A 		2
avr 3.5
(3) 		0.7
(-2.6) 		0.5
(-3) 		0.7
(-2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-2.5)
A 		2.2
(0.8)
A 		2.7
(2)
A 		1.7
(-0.4)
A 		0.6
(-3)
A 		3.1
(3)
A 		3
B 2.1
(-1.6)
A 		3.9
(0.1)
A 		1
(-2.6)
A 		6.9
(3)
A 		0.6
(-3)
A 		2.2
(-1.5)
A 		6
C 2.6
(-1.9)
A 		2.2
(-2.2)
A 		0.9
(-3)
A 		1.2
(-2.8)
A 		1.9
(-2.4)
A 		10.4
(3)
A 		10
avr 1.8
(-1.9) 		2.8
(-0.4) 		1.5
(-2.3) 		3.3
(0.3) 		1
(-3) 		5.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186306_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5798
Sequence Type Exemplar sequence
Representative Public ID Y49F6C.3 NCBI
Target Description Y49F6C.3 /REP_DB=WormBase Gene ID /WP=CE22267 /TR=Q9TYJ0 /GB=AAD12865.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062123 NCBI Caenorhabditis elegans Y49F6C.3 (Y49F6C.3) mRNA, complete cds. 11/11 None
SNAP00000037276 ENSEMBL cdna:SNAP chromosome:CEL140:II:3377112:3378644:1 11/11 None
GENEFINDER00000037286 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3377112:3378644:1 11/11 None
Y49F6C.3 ENSEMBL cdna:known chromosome:CEL140:II:3377106:3378655:1 gene:Y49F6C.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3377110-3378643(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-9
Ensembl Y49F6C.3
Entrez Gene 173681 Entrez gene
SwissProt Q9TYJ0 EMBL-EBI
WormBase CE22267 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD12865 Hypothetical protein Y49F6C.3 [Caenorhabditis elegans] ref|NP_494524.1| Y49F6C.3 [Caenorhabditis elegans] 1.0E-171
blast AAD12866 Hypothetical protein Y49F6C.4 [Caenorhabditis elegans] ref|NP_494523.1| Y49F6C.4 [Caenorhabditis elegans] 3.0E-92
blast AAF39857 Hypothetical protein F59H6.9 [Caenorhabditis elegans] ref|NP_494156.1| F59H6.9 [Caenorhabditis elegans] 2.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.1E-32
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.2E-34
Sequence
Target Sequence 
>C. ELEGANS:186306_AT
ggggatgggagttcagttgggagacattgatcaaggattatctcattgatgatagtatca
ttgttgaagcagaggtcaagatcagaaagatgactgggattcctaggaagctgctcagta
gctttgagcagtcagatgacgtcttttctgatgtggttctagcggtttacgacaagaagt
tctttgttctcaaaaagttcctcgccactcactcatcatacttcaaaactctatttctcg
gaaaattcgatgaaccagaaaaagctgaaatcgcgctcaccgacatcaatgctgccgatt
ttcagtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGATGGGAGTTCAGTTGGGAGAC 609 497 299 Antisense
CAGAAAGATGACTGGGATTCCTAGG 160 205 381 Antisense
GATTCCTAGGAAGCTGCTCAGTAGC 83 433 396 Antisense
GTAGCTTTGAGCAGTCAGATGACGT 576 457 416 Antisense
AGATGACGTCTTTTCTGATGTGGTT 556 67 432 Antisense
TGATGTGGTTCTAGCGGTTTACGAC 408 565 447 Antisense
TAGCGGTTTACGACAAGAAGTTCTT 408 645 458 Antisense
CACTCACTCATCATACTTCAAAACT 425 195 504 Antisense
TCATACTTCAAAACTCTATTTCTCG 502 619 514 Antisense
ACCGACATCAATGCTGCCGATTTTC 421 87 577 Antisense
ATCAATGCTGCCGATTTTCAGTGTC 27 27 583 Antisense
Sequence Source Affymetrix Proprietary Database