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[186304_at]

Description F18F11.1 /REP_DB=WormBase Gene ID /WP=CE17684 /TR=P91262 /GB=AAB42284.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 65      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 86      6grp_total > 55      4grp_total > 24      6grp_highest_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 680
1 2 3 4 range
A 884.1
(-3)
P 		1005.6
(-1.8)
P 		1177.6
(-0.2)
P 		1510.7
(3)
P 		627
B 830.3
(-3)
P 		1018.5
(0.2)
P 		1185.8
(3)
P 		1139.4
(2.2)
P 		356
C 969.1
(-3)
P 		970.7
(-3)
P 		1140.8
(-0.4)
P 		1372.6
(3)
P 		404
avr 894.5
(-3) 		998.3
(-1.6) 		1168.1
(0.7) 		1340.9
(3) 		446

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 603
1 2 3 4 5 6 range
A 1065
(2.6)
P 		872.7
(-0.3)
P 		1093.5
(3)
P 		883.3
(-0.1)
P 		689.1
(-3)
P 		1055.6
(2.4)
P 		404
B 1082.1
(1.6)
P 		867.8
(-3)
P 		1145
(3)
P 		879.8
(-2.7)
P 		882.7
(-2.7)
P 		1015.9
(0.2)
P 		277
C 1037.1
(0.8)
P 		862.5
(-1)
P 		934.6
(-0.3)
P 		1065.3
(1.1)
P 		658.4
(-3)
P 		1261.2
(3)
P 		603
avr 1061.4
(2.2) 		867.7
(-1) 		1057.7
(2.1) 		942.8
(0.3) 		743.4
(-3) 		1110.9
(3) 		368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 321.9
(3)
P 		218.3
(-3)
P 		307.8
(2.2)
P 		221.1
(-2.8)
P 		104
B 264.8
(1.1)
P 		251.5
(-1.4)
P 		274.8
(3)
P 		242.8
(-3)
P 		32
C 320.8
(0.2)
P 		279.1
(-1.3)
P 		397.6
(3)
P 		231.4
(-3)
P 		166
avr 302.5
(1.5) 		249.6
(-1.9) 		326.7
(3) 		231.8
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 196.3
(-3)
P 		310.4
(3)
P 		238.1
(-0.8)
P 		224
(-1.5)
P 		207.9
(-2.4)
P 		257
(0.2)
P 		114
B 376.5
(2.9)
P 		288.9
(-0.7)
P 		278
(-1.1)
P 		233
(-3)
P 		358.6
(2.2)
P 		378.8
(3)
P 		146
C 384.4
(1.9)
P 		263.2
(-1.6)
P 		237.9
(-2.3)
P 		214.2
(-3)
P 		213.1
(-3)
P 		422.2
(3)
P 		209
avr 319.1
(1.4) 		287.5
(-0) 		251.3
(-1.7) 		223.7
(-3) 		259.9
(-1.3) 		352.7
(3) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186304_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10368
Sequence Type Exemplar sequence
Representative Public ID F18F11.1 NCBI
Target Description F18F11.1 /REP_DB=WormBase Gene ID /WP=CE17684 /TR=P91262 /GB=AAB42284.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067506(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067506 NCBI Caenorhabditis elegans F18F11.1 (F18F11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000041663 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:334890:337161:-1 11/11 None
F18F11.1 ENSEMBL cdna:known chromosome:CEL140:IV:334811:337178:-1 gene:F18F11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041661 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:334889-337161(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18F11.1
Entrez Gene 184650 Entrez gene
SwissProt P91262 EMBL-EBI
WormBase CE17684 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.17601.1.S1_AT similar to peroxisomal membrane protein 4 cfa
CANINE_2:CFA.17601.1.S1_S_AT similar to peroxisomal membrane protein 4 cfa
CANINE_2:CFAAFFX.12042.1.S1_AT similar to peroxisomal membrane protein 4 cfa
CHICKEN:GGA.7201.1.S1_AT similar to hypothetical protein gga
CHICKEN:GGA.7201.2.S1_A_AT similar to hypothetical protein gga
HG-U133_PLUS_2:224210_S_AT peroxisomal membrane protein 4, 24kDa hs
HG-U133B:224210_S_AT peroxisomal membrane protein 4, 24kDa hs
HU35KSUBA:HUM_ALU_AT peroxisomal membrane protein 4, 24kDa hs
HU35KSUBB:HUM_ALU_AT peroxisomal membrane protein 4, 24kDa hs
HU35KSUBC:HUM_ALU_AT peroxisomal membrane protein 4, 24kDa hs
HU35KSUBD:HUM_ALU_AT peroxisomal membrane protein 4, 24kDa hs
HUGENEFL:HUM_ALU_AT peroxisomal membrane protein 4, 24kDa hs
HC-G110:HUM_ALU_AT peroxisomal membrane protein 4, 24kDa hs
HU35KSUBB:RC_R36871_F_AT peroxisomal membrane protein 4, 24kDa hs
HU35KSUBD:RC_R12795_F_AT peroxisomal membrane protein 4, 24kDa hs
HU35KSUBD:RC_H18064_AT peroxisomal membrane protein 4, 24kDa hs
U133_X3P:HS.241205.0.S1_3P_A_AT peroxisomal membrane protein 4, 24kDa hs
HG-U133A_2:219428_S_AT peroxisomal membrane protein 4, 24kDa hs
HG-FOCUS:219428_S_AT peroxisomal membrane protein 4, 24kDa hs
HG-U133_PLUS_2:219428_S_AT peroxisomal membrane protein 4, 24kDa hs
HG-U133A:219428_S_AT peroxisomal membrane protein 4, 24kDa hs
HG-U95E:85770_AT peroxisomal membrane protein 4, 24kDa hs
HG-U95C:54038_AT Peroxisomal membrane protein 4, 24kDa hs
HG-U95C:63586_AT Peroxisomal membrane protein 4, 24kDa hs
MG-U74BV2:111818_AT peroxisomal membrane protein 4 mm
MG-U74CV2:129314_R_AT peroxisomal membrane protein 4 mm
MG-U74BV2:163972_AT peroxisomal membrane protein 4 mm
MOE430A:1422780_AT peroxisomal membrane protein 4 mm
MOUSE430A_2:1422780_AT peroxisomal membrane protein 4 mm
MOUSE430_2:1422780_AT peroxisomal membrane protein 4 mm
MOE430B:1455438_AT Peroxisomal membrane protein 4, mRNA (cDNA clone MGC:35858 IMAGE:5100832) mm
MOUSE430_2:1455438_AT Peroxisomal membrane protein 4, mRNA (cDNA clone MGC:35858 IMAGE:5100832) mm
MU19KSUBA:TC16922_AT Peroxisomal membrane protein 4, mRNA (cDNA clone MGC:35858 IMAGE:5100832) mm
MU19KSUBA:TC16922_G_AT Peroxisomal membrane protein 4, mRNA (cDNA clone MGC:35858 IMAGE:5100832) mm
MU19KSUBB:TC29754_AT Peroxisomal membrane protein 4, mRNA (cDNA clone MGC:35858 IMAGE:5100832) mm
MU19KSUBB:TC34154_AT Peroxisomal membrane protein 4, mRNA (cDNA clone MGC:35858 IMAGE:5100832) mm
RG-U34B:RC_AA944542_AT peroxisomal membrane protein 4 rn
RAE230B:1383117_AT peroxisomal membrane protein 4 rn
RAT230_2:1383117_AT peroxisomal membrane protein 4 rn
RAE230B:1393421_AT peroxisomal membrane protein 4 rn
RAT230_2:1393421_AT peroxisomal membrane protein 4 rn
Protein Similarities
Method ID Description E-Value
blast NP_499907 F18F11.1 [Caenorhabditis elegans] gb|AAB42284.1| Hypothetical protein F18F11.1 [Caenorhabditis elegans] 1.0E-118
blast CAE65550 Hypothetical protein CBG10537 [Caenorhabditis briggsae] 1.0E-109
blast XP_799176 PREDICTED: similar to Peroxisomal membrane protein 4 (24 kDa peroxisomal intrinsic membrane protein) [Strongylocentrotus purpuratus] 3.0E-54
Sequence
Target Sequence 
>C. ELEGANS:186304_AT
atatggagttcggattcgtgccccacatgcgttggtcatggtcttcctgtttggagaagg
aacaattcttcaaaaacttctcacaatcttccgactaacgaaaactcatgcattgaacct
tggaaagtttgtgttttcttataaatttcttcaaggagcactaagtgaaattgatgggaa
aaagaaagaatggcatagttttgctgctgctcttgtcatgggatattatgtctttggaga
aaacaatgccgttaatatgcaaataaacttgtatctgttgtcgcgaattgttgtcggatt
aaccaaattagcggctaatgagaaaattatacctcagccaaacttcccagtcttcccatt
atttggtgcagccgtatggggaattgtactttggctattcgaattccatccaacagttct
tcaaggatctcttcagaaatcaatgacatacctataccatgactcaaactactggtccga
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGGAGTTCGGATTCGTGCCCCA 56 23 135 Antisense
TGGTCATGGTCTTCCTGTTTGGAGA 285 551 167 Antisense
AAAAACTTCTCACAATCTTCCGACT 697 127 206 Antisense
GAATGGCATAGTTTTGCTGCTGCTC 232 333 322 Antisense
CTGCTGCTCTTGTCATGGGATATTA 478 237 338 Antisense
GTATCTGTTGTCGCGAATTGTTGTC 220 455 405 Antisense
GTCTTCCCATTATTTGGTGCAGCCG 473 467 484 Antisense
TGGCTATTCGAATTCCATCCAACAG 64 547 526 Antisense
AACAGTTCTTCAAGGATCTCTTCAG 389 137 546 Antisense
ATGACATACCTATACCATGACTCAA 443 45 577 Antisense
CCATGACTCAAACTACTGGTCCGAT 176 271 591 Antisense
Sequence Source Affymetrix Proprietary Database