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[186303_at]

Description C49D10.7 /REP_DB=WormBase Gene ID /WP=CE08848 /TR=O16601 /GB=AAC71185.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 11.6
(-3)
A 		64.6
(1.4)
A 		44.4
(-0.3)
A 		84
(3)
A 		72
B 56.3
(-3)
P 		65.7
(0.5)
M 		58.9
(-2)
A 		72.6
(3)
A 		16
C 48.4
(-1.1)
A 		59.3
(-0.1)
A 		27.9
(-3)
A 		93.5
(3)
P 		66
avr 38.8
(-3) 		63.2
(0.3) 		43.7
(-2.3) 		83.4
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 94.9
(3)
A 		25.8
(-2.8)
A 		53.5
(-0.5)
A 		33.4
(-2.2)
A 		79
(1.7)
A 		23.7
(-3)
A 		71
B 43
(-1.1)
A 		67.3
(3)
A 		38.2
(-1.9)
A 		56.9
(1.3)
A 		52.3
(0.5)
P 		31.4
(-3)
A 		36
C 6.8
(-3)
A 		106.6
(3)
A 		8.1
(-2.9)
A 		89.1
(1.9)
P 		27.1
(-1.8)
A 		47.8
(-0.5)
A 		100
avr 48.2
(-0.3) 		66.6
(3) 		33.3
(-3) 		59.8
(1.8) 		52.8
(0.5) 		34.3
(-2.8) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.2
(-3)
A 		14
(3)
A 		11.6
(1.5)
A 		12.3
(2)
A 		10
B 18
(3)
P 		16.2
(0.5)
M 		13.6
(-3)
A 		15.5
(-0.4)
A 		4
C 16
(2.2)
A 		17
(3)
A 		9.7
(-3)
A 		15.8
(2)
P 		7
avr 12.7
(-1.4) 		15.7
(3) 		11.6
(-3) 		14.5
(1.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 17.5
(0.9)
A 		9.2
(-1.9)
A 		11.6
(-1.1)
A 		8.5
(-2.1)
A 		23.9
(3)
A 		5.8
(-3)
A 		18
B 15
(-0.4)
A 		22.4
(3)
A 		9.3
(-3)
A 		15.1
(-0.3)
A 		21.2
(2.5)
P 		11.7
(-1.9)
A 		13
C 2.5
(-2.9)
A 		32.5
(3)
A 		2.1
(-3)
A 		17.9
(0.1)
P 		8.8
(-1.7)
A 		16
(-0.3)
A 		30
avr 11.7
(-1.2) 		21.4
(3) 		7.7
(-3) 		13.8
(-0.3) 		18
(1.5) 		11.2
(-1.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186303_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4108
Sequence Type Exemplar sequence
Representative Public ID C49D10.7 NCBI
Target Description C49D10.7 /REP_DB=WormBase Gene ID /WP=CE08848 /TR=O16601 /GB=AAC71185.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062272 NCBI Caenorhabditis elegans C49D10.7 (C49D10.7) mRNA, complete cds. 11/11 None
C49D10.7 ENSEMBL cdna:known chromosome:CEL140:II:3855914:3856581:1 gene:C49D10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3855912-3856580(+) 94.21 100.0
Public Domain and Genome References
Gene Title
Ensembl C49D10.7
Entrez Gene 183609 Entrez gene
SwissProt O16601 EMBL-EBI
WormBase CE08848 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71185 Hypothetical protein C49D10.7 [Caenorhabditis elegans] ref|NP_494673.1| C49D10.7 [Caenorhabditis elegans] 1.0E-76
blast AAC71181 Hypothetical protein C49D10.8 [Caenorhabditis elegans] ref|NP_494674.1| C49D10.8 [Caenorhabditis elegans] 8.0E-43
blast AAB95169 Hypothetical protein F37C4.3 [Caenorhabditis elegans] ref|NP_500431.1| F37C4.3 [Caenorhabditis elegans] 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.3E-13
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.7E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494673.1 2 12-29,77-99
C49D10.7 2 12-29,77-99
Sequence
Target Sequence 
>C. ELEGANS:186303_AT
tcactttttcccggatacattcccaaatggatatctcggaattcttcgttcatctaaatt
ccttatgaccatgctgctcaaaagatctgaaaatcaatccgctttctctttaaccgcttt
gttttatctcaaaatgttcaagcaaattcttccattatatcttctatgtgtttcgtgtgt
ttccatgtgtgtttccatgattgccttatacaatatcttcccggataccgctgtggaaag
taacaaggactccgccctctccgacgcaatagacattttcactcacacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTTTTTCCCGGATACATTCCCA 461 625 90 Antisense
GATATCTCGGAATTCTTCGTTCATC 210 427 119 Antisense
AATTCCTTATGACCATGCTGCTCAA 593 177 146 Antisense
GAAAATCAATCCGCTTTCTCTTTAA 147 353 178 Antisense
TCTTTAACCGCTTTGTTTTATCTCA 520 615 196 Antisense
ATATCTTCTATGTGTTTCGTGTGTT 171 21 246 Antisense
TCGTGTGTTTCCATGTGTGTTTCCA 57 607 262 Antisense
TGTGTGTTTCCATGATTGCCTTATA 705 553 275 Antisense
TGCCTTATACAATATCTTCCCGGAT 123 585 291 Antisense
CTTCCCGGATACCGCTGTGGAAAGT 520 219 306 Antisense
CGCAATAGACATTTTCACTCACACC 4 255 354 Antisense
Sequence Source Affymetrix Proprietary Database