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[186302_s_at]

Description Y105C5A.1 /REP_DB=WormBase Gene ID /WP=CE23184 /TR=Q9NF71 /GB=CAB54981.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 37      6grp_total > 49      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 126.8
(3)
P 		41.4
(-2.9)
M 		40.6
(-3)
A 		62.9
(-1.4)
M 		86
B 92.8
(3)
P 		46.8
(-3)
A 		91.9
(2.9)
P 		75.7
(0.8)
P 		46
C 71.3
(-1.6)
P 		63.9
(-3)
A 		63.7
(-3)
P 		95.6
(3)
P 		32
avr 97
(3) 		50.7
(-3) 		65.4
(-1.1) 		78.1
(0.6) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 120.8
(2.6)
P 		84.4
(-0.4)
P 		54.2
(-3)
A 		99.7
(0.9)
P 		101.9
(1)
P 		125.1
(3)
P 		71
B 89.6
(1.4)
P 		102.1
(3)
P 		80.6
(0.2)
P 		55.8
(-3)
P 		73.9
(-0.7)
P 		97.7
(2.4)
P 		46
C 119.8
(2)
P 		71.4
(-3)
M 		129.5
(3)
P 		90.4
(-1)
M 		121.1
(2.1)
P 		89.3
(-1.2)
P 		58
avr 110.1
(3) 		86
(-2.1) 		88.1
(-1.7) 		82
(-3) 		99
(0.6) 		104
(1.7) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 46.2
(3)
P 		9
(-3)
M 		10.6
(-2.7)
A 		9.2
(-3)
M 		37
B 29.6
(3)
P 		11.6
(-3)
A 		21.3
(0.2)
P 		16.1
(-1.5)
P 		18
C 23.6
(3)
P 		18.4
(-1.2)
A 		22.2
(1.9)
P 		16.1
(-3)
P 		8
avr 33.1
(3) 		13
(-3) 		18
(-1.5) 		13.8
(-2.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 22.3
(0.3)
P 		30
(2.8)
P 		11.8
(-3)
A 		25.3
(1.3)
P 		30.7
(3)
P 		30.5
(2.9)
P 		19
B 31.2
(1.5)
P 		34
(2.3)
P 		19.6
(-1.7)
P 		14.8
(-3)
P 		30
(1.2)
P 		36.5
(3)
P 		22
C 44.4
(3)
P 		21.8
(-2.2)
M 		33
(0.4)
P 		18.2
(-3)
M 		39.2
(1.8)
P 		29.9
(-0.3)
P 		26
avr 32.6
(2.7) 		28.6
(1) 		21.5
(-2.1) 		19.4
(-3) 		33.3
(3) 		32.3
(2.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186302_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9344
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.1 NCBI
Target Description Y105C5A.1 /REP_DB=WormBase Gene ID /WP=CE23184 /TR=Q9NF71 /GB=CAB54981.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070470 NCBI Caenorhabditis elegans Y105C5A.1 (Y105C5A.1) mRNA, complete cds. 11/11 None
SNAP00000033696 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15551152:15554671:-1 11/11 None
GENEFINDER00000033776 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15551152:15554671:-1 11/11 None
Y105C5A.1 ENSEMBL cdna:known chromosome:CEL140:IV:15550838:15554682:-1 gene:Y105C5A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15551157-15554677(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.1
Entrez Gene 178439 Entrez gene
SwissProt Q9NF71 EMBL-EBI
WormBase CE23184 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54981 Hypothetical protein Y105C5A.1 [Caenorhabditis elegans] ref|NP_502871.1| Y105C5A.1 [Caenorhabditis elegans] 0.0
blast CAE68077 Hypothetical protein CBG13707 [Caenorhabditis briggsae] 1.0E-93
blast CAE73983 Hypothetical protein CBG21614 [Caenorhabditis briggsae] 1.0E-71
Sequence
Target Sequence 
>C. ELEGANS:186302_S_AT
ggatttgaatcggactttgagcagagaagaattcgaggaacttgttcgagaagagaagaa
taaaaagtggaagaataacgatttatctgctgaagaaaccgcaatgcttaatcaaaaaga
gctccggatccccaatcgacggcacagaactcatctttcggatcaagagaaacaagcaag
aggcgagaagatttgtgctcaactacaaccatacgtgcttcctcatttctcgaaatgtaa
ctgtaagaggatgggaagaagctcgtggagatgtgaaactgaaggaaaaagctcgtttag
tatacaggagaggaaggattatttccgtgaagtgcgagattgcaaaggagacttacagca
agttgcgaggaatttgaaagttgcgccagaagttgtcagggcatttatcaatatttatgg
gattgaatatgatttggaaatttacttcccgaacaaaaagctgccaaatttgattccaat
tgtctatgacattcctccatccaaccttccaccaatcattcctgatggatcatcaaacag
tagttctagagacggaagtccatatattccaccagaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTTGAATCGGACTTTGAGCAGA 632 509 1707 Antisense
AATCAAAAAGAGCTCCGGATCCCCA 624 169 1816 Antisense
CCAATCGACGGCACAGAACTCATCT 418 277 1838 Antisense
GGCACAGAACTCATCTTTCGGATCA 289 535 1847 Antisense
TCAACTACAACCATACGTGCTTCCT 459 629 1905 Antisense
GTGCTTCCTCATTTCTCGAAATGTA 93 481 1921 Antisense
GAAAGTTGCGCCAGAAGTTGTCAGG 160 359 2082 Antisense
GCTGCCAAATTTGATTCCAATTGTC 708 297 2166 Antisense
AATTGTCTATGACATTCCTCCATCC 160 179 2184 Antisense
CCTTCCACCAATCATTCCTGATGGA 633 269 2211 Antisense
GAAGTCCATATATTCCACCAGAAGA 536 335 2261 Antisense
Sequence Source Affymetrix Proprietary Database