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[186301_at] 7TM chemoreceptor, srz family

Description C09G12.6 /REP_DB=WormBase Gene ID /WP=CE16840 /TR=O44456 /GB=AAC25817.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 18      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 9.6
(-3)
A 		47.9
(-1.1)
A 		32.8
(-1.9)
A 		130.7
(3)
P 		121
B 32.1
(-0.8)
P 		34.7
(-0.3)
A 		19.1
(-3)
A 		54.4
(3)
P 		35
C 49
(-1.5)
P 		50.9
(-1.3)
P 		34.7
(-3)
A 		91.6
(3)
P 		57
avr 30.2
(-2.9) 		44.5
(-1.5) 		28.9
(-3) 		92.2
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 12
(-2)
A 		27.4
(-0.1)
P 		19
(-1.2)
A 		4.1
(-3)
A 		43.2
(1.8)
P 		52.9
(3)
P 		49
B 27.7
(-2.2)
M 		34.7
(0.1)
A 		43.4
(3)
P 		28
(-2.1)
A 		25.2
(-3)
A 		26.8
(-2.5)
A 		18
C 24.5
(-2)
A 		55.3
(2)
M 		62.9
(3)
P 		41.1
(0.2)
P 		16.8
(-3)
A 		28.9
(-1.4)
A 		46
avr 21.4
(-3) 		39.1
(2.2) 		41.8
(3) 		24.4
(-2.1) 		28.4
(-0.9) 		36.2
(1.4) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.5
(-3)
A 		10.4
(-0.3)
A 		8.6
(-1)
A 		19.1
(3)
P 		16
B 10.2
(1.8)
P 		8.6
(0.5)
A 		4.4
(-3)
A 		11.6
(3)
P 		7
C 16.2
(3)
P 		14.6
(0.7)
P 		12.1
(-3)
A 		15.4
(1.8)
P 		4
avr 10
(-1.6) 		11.2
(-0.6) 		8.4
(-3) 		15.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.2
(-2.4)
A 		9.7
(1.4)
P 		4.1
(-1.5)
A 		1
(-3)
A 		13
(3)
P 		12.9
(3)
P 		12
B 9.6
(0.1)
M 		11.6
(3)
A 		10.5
(1.4)
P 		7.4
(-3)
A 		10.2
(1)
A 		10
(0.7)
A 		4
C 9.1
(-1.1)
A 		16.9
(3)
M 		16
(2.5)
P 		8.3
(-1.5)
P 		5.4
(-3)
A 		9.7
(-0.8)
A 		12
avr 7
(-1.8) 		12.7
(3) 		10.2
(0.9) 		5.6
(-3) 		9.5
(0.3) 		10.9
(1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186301_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10591
Sequence Type Exemplar sequence
Representative Public ID C09G12.6 NCBI
Target Description C09G12.6 /REP_DB=WormBase Gene ID /WP=CE16840 /TR=O44456 /GB=AAC25817.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067954 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-70) (srz-70) mRNA, complete cds. 11/11 None
C09G12.6 ENSEMBL cdna:known chromosome:CEL140:IV:3477389:3479008:-1 gene:C09G12.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001975 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3477394-3482882(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srz family
Gene Symbol srz-70
Ensembl C09G12.6
Entrez Gene 182472 Entrez gene
SwissProt Q688B9 EMBL-EBI
WormBase CE37191 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05595 Serpentine receptor, class z protein 70 [Caenorhabditis elegans] ref|NP_500355.2| Serpentine Receptor, class Z family member (srz-70) [Caenorhabditis elegans] 1.0E-152
blast H88649 protein C09G12.6 [imported] - Caenorhabditis elegans 1.0E-121
blast CAJ15166 Hypothetical protein K03D3.12 [Caenorhabditis elegans] 1.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 7.6E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500355.2 7 20-42,65-87,92-114,140-162,172-194,219-241,251-273
C09G12.6 7 20-42,65-87,92-114,140-162,172-194,219-241,251-273
Sequence
Target Sequence 
>C. ELEGANS:186301_AT
attgctattattttccattgctcttgaaaaatgcctgtgcacgtttttcccaaaactcga
gccctatttcacatcagctcggaatagcctacttgataaaatttgggctttatatattgt
gcacgtgattaaggaattgagtattttagttgtggtaaggcgaactgtcggaaacggaaa
agcaaaggatacagtgggatatgttcatgggattatattatcttgtatggcactgttttc
tatgttatctgcgttgatgcactttccaattatgaaaaaaatgcgcaagctcgcgtattt
ggattcgactcagctaaataccctttacacatacatattttggctgacaattactgttgt
ggtttttaaattgatctacatattacttttcactataatttttatattgtttctccctca
attctcgattcaattattagtatacataattgctattattggaggtctcacaactcccat
tattatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTATTATTTTCCATTGCTCTT 203 7 1257 Antisense
GTGCACGTTTTTCCCAAAACTCGAG 277 475 1293 Antisense
ACATCAGCTCGGAATAGCCTACTTG 389 105 1327 Antisense
GTATGGCACTGTTTTCTATGTTATC 42 457 1481 Antisense
GTTATCTGCGTTGATGCACTTTCCA 450 447 1500 Antisense
AAATGCGCAAGCTCGCGTATTTGGA 653 119 1535 Antisense
CGCGTATTTGGATTCGACTCAGCTA 458 253 1548 Antisense
GACTCAGCTAAATACCCTTTACACA 185 373 1563 Antisense
TTATATTGTTTCTCCCTCAATTCTC 28 679 1658 Antisense
TCTCCCTCAATTCTCGATTCAATTA 100 609 1668 Antisense
AGGTCTCACAACTCCCATTATTATT 547 55 1719 Antisense
Sequence Source Affymetrix Proprietary Database