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[186300_at]

Description Y49F6C.4 /REP_DB=WormBase Gene ID /WP=CE22268 /TR=Q9TYJ1 /GB=AAD12866.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 38      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12.6
(3)
A 		3
(-2.6)
A 		2.3
(-3)
A 		4.7
(-1.6)
A 		10
B 14.9
(3)
A 		6.2
(-1.9)
A 		4.3
(-3)
A 		5.8
(-2.2)
A 		11
C 6
(3)
A 		5.9
(2.8)
A 		2.7
(-3)
A 		5.9
(2.8)
A 		3
avr 11.2
(3) 		5
(-1.6) 		3.1
(-3) 		5.5
(-1.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 33
(-0.3)
A 		14
(-2.1)
A 		4.5
(-3)
A 		19.5
(-1.6)
A 		32.7
(-0.3)
A 		68.2
(3)
A 		64
B 20.9
(-0.5)
A 		10.8
(-2.3)
A 		6.4
(-3)
A 		23.6
(-0.1)
A 		7.3
(-2.8)
A 		41.8
(3)
A 		35
C 7.2
(-2.4)
A 		8.4
(-2.2)
A 		6.2
(-2.6)
A 		29.7
(1.5)
A 		3.7
(-3)
A 		38.4
(3)
A 		35
avr 20.4
(-1) 		11.1
(-2.3) 		5.7
(-3) 		24.3
(-0.5) 		14.6
(-1.8) 		49.5
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.6
(3)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		4
B 4.7
(3)
A 		1.5
(-2.2)
A 		1
(-3)
A 		1.2
(-2.7)
A 		4
C 2
(3)
A 		1.7
(1.4)
A 		0.9
(-3)
A 		1
(-2.5)
A 		1
avr 3.8
(3) 		1.3
(-2) 		0.8
(-3) 		1
(-2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.1
(-1)
A 		5
(-1.5)
A 		1
(-3)
A 		4.9
(-1.5)
A 		9.9
(0.4)
A 		16.6
(3)
A 		16
B 7.3
(-0.6)
A 		3.6
(-2.1)
A 		1.6
(-3)
A 		6.2
(-1)
A 		2.9
(-2.4)
A 		15.6
(3)
A 		14
C 2.7
(-2.2)
A 		2.6
(-2.3)
A 		1.6
(-2.8)
A 		6
(-0.5)
A 		1.2
(-3)
A 		12.9
(3)
A 		12
avr 5.4
(-1.2) 		3.7
(-2) 		1.4
(-3) 		5.7
(-1.1) 		4.7
(-1.5) 		15
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186300_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5617
Sequence Type Exemplar sequence
Representative Public ID Y49F6C.4 NCBI
Target Description Y49F6C.4 /REP_DB=WormBase Gene ID /WP=CE22268 /TR=Q9TYJ1 /GB=AAD12866.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062122(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062122 NCBI Caenorhabditis elegans Y49F6C.4 (Y49F6C.4) mRNA, complete cds. 11/11 None
SNAP00000037275 ENSEMBL cdna:SNAP chromosome:CEL140:II:3375148:3376643:1 11/11 None
GENEFINDER00000037281 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3375148:3376643:1 11/11 None
Y49F6C.4 ENSEMBL cdna:known chromosome:CEL140:II:3375138:3376709:1 gene:Y49F6C.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3375146-3376642(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-10
Ensembl Y49F6C.4
Entrez Gene 173680 Entrez gene
SwissProt Q9TYJ1 EMBL-EBI
WormBase CE22268 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD12866 Hypothetical protein Y49F6C.4 [Caenorhabditis elegans] ref|NP_494523.1| Y49F6C.4 [Caenorhabditis elegans] 1.0E-180
blast AAD12865 Hypothetical protein Y49F6C.3 [Caenorhabditis elegans] ref|NP_494524.1| Y49F6C.3 [Caenorhabditis elegans] 3.0E-92
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 2.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.0E-25
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.9E-31
Sequence
Target Sequence 
>C. ELEGANS:186300_AT
gatatgattattgccgttggggatagaaagttctatgttctcaaacagctcctcgcttca
aactctacacactttcaatctcttattcccctggactttgaagaaatggactgtgaagga
aaatcggagatcaccctgccagatatcaacccctccgattttcagtgtctcctggaggtt
ctgtacggagagcctgctatggatgacgagaacgttgaagggattcttcattcggctcac
atgtacaaaatgacaaaagtaattcggaactgtgaagagtttctttccaacaaatctgaa
aaacccatgagggataagttcaaaattgcaaagcaataccaactggagagtttgaagaaa
tcatgtctctcaaaaatccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGATTATTGCCGTTGGGGATA 155 421 460 Antisense
GTTCTATGTTCTCAAACAGCTCCTC 603 443 489 Antisense
GCTTCAAACTCTACACACTTTCAAT 57 305 514 Antisense
TACACACTTTCAATCTCTTATTCCC 254 643 525 Antisense
TCTCTTATTCCCCTGGACTTTGAAG 623 591 538 Antisense
AGGAAAATCGGAGATCACCCTGCCA 163 55 576 Antisense
GAGATCACCCTGCCAGATATCAACC 324 397 586 Antisense
GGAGAGCCTGCTATGGATGACGAGA 362 519 646 Antisense
ATTCTTCATTCGGCTCACATGTACA 362 11 682 Antisense
GAAGAGTTTCTTTCCAACAAATCTG 188 339 733 Antisense
GAAATCATGTCTCTCAAAAATCCAA 670 361 816 Antisense
Sequence Source Affymetrix Proprietary Database