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[186298_at]

Description Y32B12C.1 /REP_DB=WormBase Gene ID /WP=CE19067 /TR=Q9XX08 /GB=CAA21034.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 10.1
(-1.1)
A 		10.5
(-0.8)
A 		7.1
(-3)
A 		16.5
(3)
A 		9
B 13.3
(0.3)
A 		19.3
(3)
A 		6.3
(-2.9)
A 		6.1
(-3)
A 		13
C 73.2
(2.1)
A 		4.5
(-3)
A 		32.7
(-0.9)
A 		85.3
(3)
A 		81
avr 32.2
(2.1) 		11.4
(-3) 		15.4
(-2) 		36
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 6.4
(-3)
A 		7.1
(-2.9)
A 		34.2
(0.6)
A 		52.7
(3)
A 		9.8
(-2.6)
A 		38.2
(1.1)
A 		46
B 47
(3)
A 		5.7
(-2.9)
A 		43.9
(2.6)
A 		13.8
(-1.8)
A 		5.2
(-3)
A 		31.5
(0.8)
A 		42
C 9.7
(-2.3)
A 		72.1
(3)
A 		1.9
(-3)
A 		9.8
(-2.3)
A 		7.7
(-2.5)
A 		37.9
(0.1)
A 		70
avr 21
(-0.2) 		28.3
(1.4) 		26.7
(1) 		25.4
(0.8) 		7.6
(-3) 		35.9
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 3.7
(3)
A 		2.3
(-1.7)
A 		1.9
(-3)
A 		2.4
(-1.3)
A 		2
B 4.2
(2)
A 		4.8
(3)
A 		1.5
(-2.7)
A 		1.3
(-3)
A 		4
C 24.2
(3)
A 		1.3
(-3)
A 		11.4
(-0.4)
A 		14.4
(0.4)
A 		23
avr 10.7
(3) 		2.8
(-3) 		4.9
(-1.4) 		6
(-0.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.5
(-2.4)
A 		7.4
(0)
A 		13.4
(3)
A 		2.9
(-2.2)
A 		9.3
(1)
A 		12
B 16.3
(3)
A 		1.9
(-3)
A 		10.7
(0.7)
A 		3.7
(-2.3)
A 		2.1
(-2.9)
A 		11.8
(1.1)
A 		14
C 3.6
(-2.1)
A 		22
(3)
A 		0.5
(-3)
A 		2
(-2.6)
A 		2.5
(-2.4)
A 		12.7
(0.4)
A 		22
avr 7
(0.1) 		8.8
(1.3) 		6.2
(-0.5) 		6.4
(-0.3) 		2.5
(-3) 		11.3
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186298_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13892
Sequence Type Exemplar sequence
Representative Public ID Y32B12C.1 NCBI
Target Description Y32B12C.1 /REP_DB=WormBase Gene ID /WP=CE19067 /TR=Q9XX08 /GB=CAA21034.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074800(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074800 NCBI Caenorhabditis elegans Y32B12C.1 (Y32B12C.1) mRNA, complete cds. 11/11 None
SNAP00000038330 ENSEMBL cdna:SNAP chromosome:CEL140:V:16609201:16610558:1 11/11 None
GENEFINDER00000038333 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16609201:16610558:1 11/11 None
Y32B12C.1 ENSEMBL cdna:known chromosome:CEL140:V:16609201:16610558:1 gene:Y32B12C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16609200-16610558(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32B12C.1
Entrez Gene 189572 Entrez gene
SwissProt Q9XX08 EMBL-EBI
WormBase CE19067 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6298 mismatch repair inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3684 damaged DNA binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21034 Hypothetical protein Y32B12C.1 [Caenorhabditis elegans] ref|NP_507201.1| Y32B12C.1 [Caenorhabditis elegans] 1.0E-149
blast CAB07256 Hypothetical protein K10G4.3 [Caenorhabditis elegans] ref|NP_507374.1| K10G4.3 [Caenorhabditis elegans] 1.0E-27
Sequence
Target Sequence 
>C. ELEGANS:186298_AT
aaatcatgtacctcagttagtcaaagagttctgccttgaaaaacgaagatatggagttaa
cccgatgtatgtgcacttcttattttgctactacaaaaaaaatattgaggacactcgtgg
aagattggaagacgataaagaaactttagaagaaattcaaagaacccacgacgaactcaa
cgtaaaatttgaagaactcaacaaagtgaaaacatttatcaaaaagcaaaaggaaagcaa
aggaaacgtttatttaccaaacgaatatacagaaaagcatcgtcttcaaaacacgattga
caacttgaaagacaagattcaaattcttgtttcaacaagaaacgagcaactgtgggactt
tgacaatattcctgatggattccagccaatgctggaactgcaccatttaaaaaaagacca
agttgtctattttgtggagaaatatcttcaaagatacactcttggcaataaacacaaaga
aattcaactgattgttggaaaaggctcgcactcgattgacaatgattctgcaattcagag
aaaaatccggagaaactatgctgaaaatgtgcgctcacaccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCATGTACCTCAGTTAGTCAAA 355 115 165 Antisense
GTTAACCCGATGTATGTGCACTTCT 546 445 220 Antisense
GTGCACTTCTTATTTTGCTACTACA 41 481 235 Antisense
GGACACTCGTGGAAGATTGGAAGAC 92 527 273 Antisense
CAAAGAACCCACGACGAACTCAACG 603 191 322 Antisense
AACGAGCAACTGTGGGACTTTGACA 12 141 505 Antisense
GACTTTGACAATATTCCTGATGGAT 616 371 520 Antisense
TCCTGATGGATTCCAGCCAATGCTG 709 593 534 Antisense
GACCAAGTTGTCTATTTTGTGGAGA 419 383 580 Antisense
GAAAAGGCTCGCACTCGATTGACAA 12 355 662 Antisense
TGCTGAAAATGTGCGCTCACACCCT 488 581 723 Antisense
Sequence Source Affymetrix Proprietary Database