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[186297_s_at]

Description C08F11.10 /REP_DB=WormBase Gene ID /WP=CE17387 /TR=O62052 /GB=CAB05677.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 61      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 6.5
(3)
A 		6.3
(2.4)
A 		5.1
(-1.4)
A 		4.6
(-3)
A 		2
B 7.7
(3)
A 		7.7
(3)
A 		6.2
(-0.5)
A 		5.1
(-3)
A 		3
C 6
(0)
A 		4.3
(-3)
A 		7.7
(3)
A 		5.4
(-1.1)
A 		3
avr 6.7
(3) 		6.1
(0.9) 		6.3
(1.6) 		5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 7.5
(-2.8)
A 		8.3
(-2.8)
A 		6.3
(-2.9)
A 		4
(-3)
A 		38.6
(-1.3)
A 		122.8
(3)
P 		119
B 5.3
(-2.9)
A 		3
(-3)
A 		3
(-3)
A 		9.9
(-2.7)
A 		68.5
(-0.4)
A 		152.8
(3)
P 		150
C 7.9
(-2.8)
A 		5.4
(-2.9)
A 		3.5
(-3)
A 		17.1
(-2.3)
A 		83
(1.1)
P 		119.8
(3)
P 		116
avr 6.9
(-2.9) 		5.6
(-2.9) 		4.3
(-3) 		10.3
(-2.7) 		63.4
(-0.2) 		131.8
(3) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.4
(3)
A 		1.4
(-0.5)
A 		1.3
(-0.9)
A 		0.7
(-3)
A 		2
B 2.5
(3)
A 		1.9
(0.4)
A 		1.4
(-1.7)
A 		1.1
(-3)
A 		1
C 2
(0.7)
A 		1.2
(-2)
A 		2.7
(3)
A 		0.9
(-3)
A 		2
avr 2.3
(3) 		1.5
(-0.4) 		1.8
(0.9) 		0.9
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		2.9
(-2.6)
A 		1.4
(-2.9)
A 		1
(-3)
A 		11.6
(-0.8)
A 		29.9
(3)
P 		29
B 1.8
(-2.9)
A 		1
(-3)
A 		0.7
(-3)
A 		2.6
(-2.8)
A 		27.8
(-0.1)
A 		57
(3)
P 		56
C 2.9
(-2.7)
A 		1.6
(-2.9)
A 		0.9
(-3)
A 		3.4
(-2.6)
A 		26.9
(1)
P 		40.1
(3)
P 		39
avr 2
(-2.9) 		1.8
(-2.9) 		1
(-3) 		2.3
(-2.8) 		22.1
(0.1) 		42.3
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186297_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9564
Sequence Type Exemplar sequence
Representative Public ID C08F11.10 NCBI
Target Description C08F11.10 /REP_DB=WormBase Gene ID /WP=CE17387 /TR=O62052 /GB=CAB05677.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070235(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070235 NCBI Caenorhabditis elegans C08F11.10 (C08F11.10) mRNA, complete cds. 11/11 None
SNAP00000042604 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13648038:13649179:-1 11/11 None
GENEFINDER00000042609 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13646797:13649179:-1 11/11 None
C08F11.10 ENSEMBL cdna:known chromosome:CEL140:IV:13648038:13649179:-1 gene:C08F11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13648043-13649185(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F11.10
Entrez Gene 178332 Entrez gene
SwissProt O62052 EMBL-EBI
WormBase CE17387 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05677 Hypothetical protein C08F11.10 [Caenorhabditis elegans] ref|NP_502636.1| C08F11.10 [Caenorhabditis elegans] 1.0E-148
blast AAC24438 Hypothetical protein W03B1.3 [Caenorhabditis elegans] ref|NP_500542.1| W03B1.3 [Caenorhabditis elegans] 7.0E-83
blast AAC24438 Hypothetical protein W03B1.3 [Caenorhabditis elegans] ref|NP_500542.1| W03B1.3 [Caenorhabditis elegans] 1.0E-82
blast CAE61110 Hypothetical protein CBG04867 [Caenorhabditis briggsae] 5.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR009981 EMBL-EBI Protein of unknown function DUF1505 4.3E-43
Sequence
Target Sequence 
>C. ELEGANS:186297_S_AT
gtggccgtgtggagtcttacaagtcgtgctgtgaccgtcttcatcaagctctcatgtaca
tgctcgtcgaaaatgcggtcacttcaaagcagctggtcaccggagcaagaacggagccac
actatcgctatgccggacagtacttgaagacttatgaaatcattgcaaatcagggaagag
ataagacaaagtacgaaagtttggagccagctattaaagcgctccttacactggattcgg
agcatgagaagaaggttcggaagcaattggagaatctcaagccacttaccaagttcattg
gagaggactactgggagtatgtcagattgaagaaagtctatgcggaatctgtggatggat
acgacgaggccgttgttctgcagaacaagggaaaaactgaagatgctgagacagcggcaa
caaatgctcagacttggatgaatgattgccgtaccaaattgatggatttcatcaccgtct
cgatctcccagcaaaaggcaaagcatgctgattgtgtgctcaagttccgcgacgaatccg
tctcttaccataagatcatggctgattcgatcacgactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCCGTGTGGAGTCTTACAAGTC 90 491 173 Antisense
TTACAAGTCGTGCTGTGACCGTCTT 468 673 189 Antisense
CAAGCTCTCATGTACATGCTCGTCG 411 185 217 Antisense
GGTCACTTCAAAGCAGCTGGTCACC 200 503 249 Antisense
TATCGCTATGCCGGACAGTACTTGA 681 657 295 Antisense
GCTATTAAAGCGCTCCTTACACTGG 136 303 382 Antisense
GAATCTCAAGCCACTTACCAAGTTC 105 329 444 Antisense
GGATACGACGAGGCCGTTGTTCTGC 179 511 529 Antisense
TGCTGATTGTGTGCTCAAGTTCCGC 668 581 678 Antisense
TCAAGTTCCGCGACGAATCCGTCTC 493 631 692 Antisense
TCATGGCTGATTCGATCACGACTCC 289 621 728 Antisense
Sequence Source Affymetrix Proprietary Database