[Home] | [Total List]

[186296_s_at]

Description F33G12.2 /REP_DB=WormBase Gene ID /WP=CE27149 /TR=Q19986 /GB=AAK31511.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 75      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 93      6grp_total > 76      4grp_total > 13      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 269.4
(0.8)
P 		174.9
(-1.5)
P 		114.8
(-3)
P 		359.2
(3)
P 		244
B 257.7
(-0)
P 		158.5
(-2.2)
P 		120.1
(-3)
P 		396.5
(3)
P 		276
C 290.7
(2.7)
P 		148.6
(-3)
P 		172.4
(-2)
P 		297.2
(3)
P 		149
avr 272.6
(0.8) 		160.7
(-2.3) 		135.8
(-3) 		351
(3) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 412
1 2 3 4 5 6 range
A 214.3
(-3)
P 		266.5
(-2.2)
P 		477.9
(0.9)
P 		389.1
(-0.4)
P 		305.9
(-1.7)
P 		624.3
(3)
P 		410
B 256
(-2.8)
P 		243.3
(-3)
P 		352
(-1.2)
P 		353
(-1.2)
P 		358.5
(-1.1)
P 		611.7
(3)
P 		368
C 279.2
(-1.9)
P 		212.6
(-3)
P 		306.7
(-1.5)
P 		384.6
(-0.2)
P 		322.3
(-1.2)
P 		586.7
(3)
P 		374
avr 249.8
(-2.9) 		240.8
(-3) 		378.9
(-0.7) 		375.6
(-0.8) 		328.9
(-1.6) 		607.6
(3) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 98.1
(3)
P 		38
(-2.3)
P 		30
(-3)
P 		52.6
(-1)
P 		68
B 82.2
(2.8)
P 		39.1
(-1.8)
P 		27.8
(-3)
P 		84.5
(3)
P 		57
C 96.2
(3)
P 		42.7
(-3)
P 		60.1
(-1)
P 		50.1
(-2.2)
P 		54
avr 92.2
(3) 		39.9
(-2.9) 		39.3
(-3) 		62.4
(-0.4) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 39.5
(-3)
P 		94.8
(-0.1)
P 		104.1
(0.4)
P 		98.7
(0.2)
P 		92.3
(-0.2)
P 		152
(3)
P 		113
B 89.1
(-2.7)
P 		81
(-3)
P 		85.5
(-2.8)
P 		93.5
(-2.5)
P 		145.7
(-0.4)
P 		228.1
(3)
P 		147
C 103.5
(-1.2)
P 		64.9
(-3)
P 		78.1
(-2.4)
P 		77.3
(-2.4)
P 		104.3
(-1.2)
P 		196.4
(3)
P 		132
avr 77.4
(-3) 		80.2
(-2.9) 		89.2
(-2.4) 		89.8
(-2.4) 		114.1
(-1.1) 		192.2
(3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186296_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5071
Sequence Type Exemplar sequence
Representative Public ID F33G12.2 NCBI
Target Description F33G12.2 /REP_DB=WormBase Gene ID /WP=CE27149 /TR=Q19986 /GB=AAK31511.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062525 NCBI Caenorhabditis elegans F33G12.2 (F33G12.2) mRNA, complete cds. 11/11 None
SNAP00000025573 ENSEMBL cdna:SNAP chromosome:CEL140:II:5029982:5031692:-1 11/11 None
GENEFINDER00000025585 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5029982:5031692:-1 11/11 None
F33G12.2 ENSEMBL cdna:known chromosome:CEL140:II:5029982:5031692:-1 gene:F33G12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5029979-5031690(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33G12.2
Entrez Gene 173867 Entrez gene
SwissProt Q19986 EMBL-EBI
WormBase CE27149 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247256_AT transducin family protein / WD-40 repeat family protein at
CANINE:1586283_AT similar to mitogen-activated protein kinase organizer 1 cfa
CANINE_2:CFA.1439.1.A1_AT similar to mitogen-activated protein kinase organizer 1 cfa
CANINE_2:CFAAFFX.26382.1.S1_S_AT similar to mitogen-activated protein kinase organizer 1 cfa
DROSOPHILA_2:1630373_AT dm
DROSGENOME1:144296_AT dm
HG-U133_PLUS_2:224434_S_AT mitogen-activated protein kinase organizer 1 hs
HG-U133B:224434_S_AT mitogen-activated protein kinase organizer 1 hs
U133_X3P:G13543423_3P_S_AT mitogen-activated protein kinase organizer 1 hs
MG-U74BV2:165093_I_AT RIKEN cDNA 1500041N16 gene mm
MOE430A:1418732_S_AT RIKEN cDNA 1500041N16 gene mm
MOUSE430A_2:1418732_S_AT RIKEN cDNA 1500041N16 gene mm
MOUSE430_2:1418732_S_AT RIKEN cDNA 1500041N16 gene mm
RG-U34C:RC_AI232526_AT similar to RIKEN cDNA 1500041N16 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK31511 Hypothetical protein F33G12.2 [Caenorhabditis elegans] ref|NP_494926.1| F33G12.2 [Caenorhabditis elegans] 1.0E-174
blast CAE59023 Hypothetical protein CBG02300 [Caenorhabditis briggsae] 1.0E-166
blast T16241 hypothetical protein F33G12.2 - Caenorhabditis elegans 1.0E-158
blast AAK31511 Hypothetical protein F33G12.2 [Caenorhabditis elegans] ref|NP_494926.1| F33G12.2 [Caenorhabditis elegans] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.8E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0037
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.3E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.3E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.085
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0096
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0056
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.3E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.085
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0096
Sequence
Target Sequence 
>C. ELEGANS:186296_S_AT
gaatcatctgtggtattctccggctcaatggactgtacaatgcaggcatttgactgcaga
tctcgaagtgaaaaacctattcaaatattcaatgaatcaactgatggaattctctcaatt
gatgttaatggccatgagattgttgctggaagtgctgatggaaattacagagtctatagt
attagagatggaaatatgacagtcgactacatgggagattcagtaaacagtgtcagcttt
accccagacagtaattgcctgttggctggagtaatgggtggaattgttcggcttattgat
aaatctagtggaaaattgctagcaagctataaaggtcatcaaaacacggaatacaaatta
gactgccgagttttacaatccatcgagcacgtggcaagtggctcagaagacggattcgtt
tatgtgtatagtctcctcgattcacacatcgtgtcgaaactcgaacatccttcaaaagtg
attcattctctgacggctcatccgaaaaaagaacgactcatgactgcagcaggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCATCTGTGGTATTCTCCGGCT 681 327 286 Antisense
CAGGCATTTGACTGCAGATCTCGAA 379 207 328 Antisense
GTAAACAGTGTCAGCTTTACCCCAG 472 461 508 Antisense
GGGTGGAATTGTTCGGCTTATTGAT 161 497 561 Antisense
AGACTGCCGAGTTTTACAATCCATC 207 71 645 Antisense
TCCATCGAGCACGTGGCAAGTGGCT 223 591 664 Antisense
TTATGTGTATAGTCTCCTCGATTCA 519 681 705 Antisense
CTCCTCGATTCACACATCGTGTCGA 537 235 718 Antisense
TGTCGAAACTCGAACATCCTTCAAA 175 557 737 Antisense
AAAGTGATTCATTCTCTGACGGCTC 510 121 760 Antisense
GAACGACTCATGACTGCAGCAGGAC 435 347 796 Antisense
Sequence Source Affymetrix Proprietary Database