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[186295_at]

Description F36H12.3 /REP_DB=WormBase Gene ID /WP=CE09975 /TR=O76719 /GB=AAC26930.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 27      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 26
(-3)
A 		49.8
(3)
A 		27.9
(-2.5)
A 		35.2
(-0.7)
A 		24
B 36.4
(3)
A 		17.9
(-2.3)
A 		15.6
(-3)
A 		19.2
(-2)
A 		21
C 20.5
(-3)
A 		33.4
(-1)
P 		21.2
(-2.9)
A 		58.6
(3)
A 		38
avr 27.6
(-0.8) 		33.7
(1.5) 		21.6
(-3) 		37.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 12
(-2.7)
A 		2.6
(-3)
A 		36.9
(-2)
A 		61.4
(-1.3)
P 		107.8
(0.1)
P 		205.9
(3)
P 		203
B 14.3
(-3)
A 		42.7
(-2)
P 		38.3
(-2.2)
A 		38.9
(-2.2)
A 		99.3
(-0.1)
P 		190.2
(3)
P 		176
C 17.8
(-2.4)
A 		70.6
(-0.6)
P 		1.4
(-3)
A 		34.6
(-1.9)
A 		71.6
(-0.6)
P 		175.8
(3)
P 		174
avr 14.7
(-3) 		38.6
(-2.2) 		25.5
(-2.6) 		45
(-2) 		92.9
(-0.3) 		190.6
(3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9.5
(1.6)
A 		10.8
(3)
A 		7.3
(-0.7)
A 		5.1
(-3)
A 		6
B 11.6
(3)
A 		4.4
(-2.4)
A 		3.6
(-3)
A 		4.1
(-2.6)
A 		8
C 6.8
(-3)
A 		9.6
(2.4)
P 		7.4
(-1.8)
A 		9.9
(3)
A 		3
avr 9.3
(3) 		8.3
(1.1) 		6.1
(-3) 		6.4
(-2.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 2.2
(-2.8)
A 		0.9
(-3)
A 		8
(-2.1)
A 		15.6
(-1.2)
P 		32.5
(0.9)
P 		50.1
(3)
P 		49
B 5
(-3)
A 		14.2
(-2.2)
P 		9.3
(-2.6)
A 		10.3
(-2.5)
A 		40.3
(0.2)
P 		70.9
(3)
P 		66
C 6.6
(-2.4)
A 		21.5
(-0.8)
P 		0.3
(-3)
A 		7
(-2.3)
A 		23.2
(-0.7)
P 		58.8
(3)
P 		59
avr 4.6
(-3) 		12.2
(-2.2) 		5.9
(-2.9) 		11
(-2.3) 		32
(-0) 		59.9
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186295_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10885
Sequence Type Exemplar sequence
Representative Public ID F36H12.3 NCBI
Target Description F36H12.3 /REP_DB=WormBase Gene ID /WP=CE09975 /TR=O76719 /GB=AAC26930.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068366 NCBI Caenorhabditis elegans F36H12.3 (F36H12.3) mRNA, complete cds. 11/11 None
SNAP00000002645 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5272860:5274129:1 11/11 None
GENEFINDER00000002657 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5272860:5274129:1 11/11 None
F36H12.3 ENSEMBL cdna:known chromosome:CEL140:IV:5272860:5274129:1 gene:F36H12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5272865-5274135(+) 53.47 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H12.3
Entrez Gene 177307 Entrez gene
SwissProt O76719 EMBL-EBI
WormBase CE09975 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26930 Hypothetical protein F36H12.3 [Caenorhabditis elegans] ref|NP_500767.1| F36H12.3 [Caenorhabditis elegans] 9.0E-63
blast AAC17524 Hypothetical protein C35E7.9 [Caenorhabditis elegans] ref|NP_492824.1| C35E7.9 [Caenorhabditis elegans] 2.0E-54
blast CAE60485 Hypothetical protein CBG04099 [Caenorhabditis briggsae] 8.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 4.4E-31
Sequence
Target Sequence 
>C. ELEGANS:186295_AT
gaagaaggtggaaccgaagcctggagagccgaaaccccatatcagtatcgagccacccgg
tgatctgatgttcaaggccgatcagcaagagcagaagaagctgacactcacaaacactca
tgacaagaagatcatgttcaagattaagacatcggataatcaggtttatctcgtgaatcc
agtgtacggtactgtcgaaccaggaaaaactgctgatcttacaatcactcgaaacaaggc
cccagcaaaggaagctaagcttgtcattgtgaacagtgtgttttctggtgatgataagga
tcttgccaaatcattcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAAGGTGGAACCGAAGCCTGGA 470 339 651 Antisense
GAACCGAAGCCTGGAGAGCCGAAAC 606 345 661 Antisense
GAGCCGAAACCCCATATCAGTATCG 269 385 676 Antisense
GAAACCCCATATCAGTATCGAGCCA 238 357 681 Antisense
GAAGCTGACACTCACAAACACTCAT 311 343 747 Antisense
GACACTCACAAACACTCATGACAAG 451 367 753 Antisense
GGTTTATCTCGTGAATCCAGTGTAC 586 505 813 Antisense
AGTGTACGGTACTGTCGAACCAGGA 478 1 831 Antisense
AACTGCTGATCTTACAATCACTCGA 70 143 858 Antisense
GAAACAAGGCCCCAGCAAAGGAAGC 446 355 881 Antisense
TAAGGATCTTGCCAAATCATTCAAG 423 619 945 Antisense
Sequence Source Affymetrix Proprietary Database