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[186294_at]

Description Y39C12A.4 /REP_DB=WormBase Gene ID /WP=CE21705 /TR=Q9U2L7 /GB=CAB60489.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 05      6grp_total_sub > Hat      6grp_cgc > 63      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 36.3
(-0.6)
M 		7.2
(-3)
A 		17
(-2.2)
A 		79
(3)
P 		72
B 49
(3)
A 		28.4
(-3)
A 		41
(0.7)
A 		45.7
(2)
A 		21
C 43.7
(-1.3)
A 		4.6
(-3)
A 		17.2
(-2.4)
A 		138.9
(3)
P 		134
avr 43
(-0.6) 		13.4
(-3) 		25.1
(-2.1) 		87.9
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 16
(-0.8)
A 		7
(-2.3)
A 		37.3
(3)
A 		3.3
(-3)
A 		20.6
(0.1)
A 		33.8
(2.4)
A 		34
B 24
(-1.2)
A 		52.4
(2.6)
A 		43
(1.3)
A 		55.4
(3)
A 		40.3
(1)
A 		10.8
(-3)
A 		45
C 27.2
(-1.1)
A 		70.8
(3)
P 		6.8
(-3)
A 		38.5
(-0)
A 		20.7
(-1.7)
A 		37.6
(-0.1)
A 		64
avr 22.4
(-3) 		43.4
(3) 		29
(-1.1) 		32.4
(-0.1) 		27.2
(-1.6) 		27.4
(-1.6) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 13.2
(3)
M 		1.6
(-3)
A 		4.5
(-1.5)
A 		11.6
(2.2)
P 		12
B 15.6
(3)
A 		7
(-3)
A 		9.5
(-1.3)
A 		9.7
(-1.1)
A 		9
C 14.5
(0.6)
A 		1.3
(-3)
A 		6
(-1.7)
A 		23.4
(3)
P 		22
avr 14.4
(2.7) 		3.3
(-3) 		6.7
(-1.2) 		14.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3
(-1.2)
A 		2.5
(-1.6)
A 		8.1
(2.9)
A 		0.8
(-3)
A 		6.2
(1.4)
A 		8.2
(3)
A 		7
B 8.4
(-1)
A 		17.4
(3)
A 		10.4
(-0.1)
A 		14.7
(1.8)
A 		16.4
(2.6)
A 		4
(-3)
A 		13
C 10.1
(-0.5)
A 		21.6
(3)
P 		1.7
(-3)
A 		7.8
(-1.2)
A 		6.7
(-1.5)
A 		12.6
(0.3)
A 		20
avr 7.2
(-2.6) 		13.8
(3) 		6.7
(-3) 		7.8
(-2.1) 		9.8
(-0.4) 		8.3
(-1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186294_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9219
Sequence Type Exemplar sequence
Representative Public ID Y39C12A.4 NCBI
Target Description Y39C12A.4 /REP_DB=WormBase Gene ID /WP=CE21705 /TR=Q9U2L7 /GB=CAB60489.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000019626 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12232745:12233379:-1 11/11 None
Y39C12A.4 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:12232745:12233379:-1 gene:Y39C12A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12232750-12233385(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y39C12A.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60490 Hypothetical protein Y39C12A.5 [Caenorhabditis elegans] ref|NP_502323.2| Serpentine Receptor, class E (epsilon) family member (sre-16) [Caenorhabditis elegans] 2.0E-30
blast CAB60491 Hypothetical protein Y39C12A.6 [Caenorhabditis elegans] ref|NP_502324.1| Serpentine Receptor, class E (epsilon) family member (sre-19) [Caenorhabditis elegans] 5.0E-20
blast CAE62208 Hypothetical protein CBG06258 [Caenorhabditis briggsae] 5.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 3.9E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019626 4 13-35,50-72,93-112,127-149
Sequence
Target Sequence 
>C. ELEGANS:186294_AT
acatattcgttttttactgcctcatacgtttttgtcatacttctctacattttctcaatt
ttatactatatattaaacacatttgtaagcataaaagggggttatttgaaaagaaatatt
catcttgtacatcaagcaatgtatatttcctgcccaatcacttcagggtttttgattttt
gaaaaagtattggtttttttggaaatacgagatgattttgaaaattctaatgagatttac
aatcaactcctacatctacggacagcactttcgtctgttccattttattctttgatgttc
acaatgttggaaagaatatttgcaacatactatatcaaggattatgagaagaatccaaga
aaatatataggacattctctaattattttactatgtgtttcatctgctataactgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATATTCGTTTTTTACTGCCTCAT 12 105 28 Antisense
ACTGCCTCATACGTTTTTGTCATAC 182 99 43 Antisense
TTTGTCATACTTCTCTACATTTTCT 635 665 58 Antisense
AGCAATGTATATTTCCTGCCCAATC 37 77 162 Antisense
CTGCCCAATCACTTCAGGGTTTTTG 24 235 177 Antisense
GAGATTTACAATCAACTCCTACATC 172 395 259 Antisense
AACTCCTACATCTACGGACAGCACT 64 143 272 Antisense
TACGGACAGCACTTTCGTCTGTTCC 377 647 284 Antisense
CGTCTGTTCCATTTTATTCTTTGAT 29 247 299 Antisense
AGGACATTCTCTAATTATTTTACTA 421 55 396 Antisense
TATGTGTTTCATCTGCTATAACTGC 28 657 419 Antisense
Sequence Source Affymetrix Proprietary Database