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[186293_at]

Description D1007.10 /REP_DB=WormBase Gene ID /WP=CE09045 /TR=O01866 /GB=AAK18916.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 82      6grp_total > 85      4grp_total > 21      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 269.9
(0.7)
P 		226.7
(-0.8)
P 		165.5
(-3)
P 		335.6
(3)
P 		170
B 296.7
(0.9)
P 		221.6
(-3)
P 		252.1
(-1.4)
P 		338.1
(3)
P 		117
C 285.1
(2.2)
P 		263.2
(0.6)
P 		215.6
(-3)
P 		295.4
(3)
P 		80
avr 283.9
(0.9) 		237.2
(-1.6) 		211.1
(-3) 		323
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 287.8
(-3)
P 		308.4
(-2.3)
P 		316.6
(-2.1)
P 		368.1
(-0.4)
P 		360.4
(-0.6)
P 		472.8
(3)
P 		185
B 256.1
(-3)
P 		301.8
(-1.6)
P 		279.3
(-2.3)
P 		382.4
(0.8)
P 		373.7
(0.5)
P 		456.3
(3)
P 		200
C 252.8
(-2.8)
P 		246.2
(-3)
P 		290.7
(-1.8)
P 		447
(2.3)
P 		316.9
(-1.1)
P 		471.7
(3)
P 		226
avr 265.6
(-3) 		285.5
(-2.4) 		295.5
(-2.1) 		399.2
(1) 		350.3
(-0.5) 		466.9
(3) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 98.3
(3)
P 		49.2
(-2.4)
P 		43.3
(-3)
P 		49.1
(-2.4)
P 		55
B 94.6
(3)
P 		54.7
(-3)
P 		58.4
(-2.4)
P 		72
(-0.4)
P 		40
C 94.4
(3)
P 		75.7
(0.5)
P 		75.1
(0.4)
P 		49.8
(-3)
P 		45
avr 95.8
(3) 		59.9
(-2.6) 		58.9
(-2.7) 		57
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 53.1
(-3)
P 		109.7
(2.5)
P 		69
(-1.5)
P 		93.4
(0.9)
P 		108.7
(2.4)
P 		115.1
(3)
P 		62
B 89.1
(-1.8)
P 		100.5
(-1.1)
P 		67.8
(-3)
P 		101.3
(-1)
P 		151.8
(1.9)
P 		170.2
(3)
P 		102
C 93.7
(-1.6)
P 		75.1
(-2.9)
P 		74
(-3)
P 		89.9
(-1.9)
P 		102.6
(-1)
P 		157.9
(3)
P 		84
avr 78.6
(-2.4) 		95.1
(-1.1) 		70.3
(-3) 		94.9
(-1.1) 		121
(0.9) 		147.7
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186293_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2215
Sequence Type Exemplar sequence
Representative Public ID D1007.10 NCBI
Target Description D1007.10 /REP_DB=WormBase Gene ID /WP=CE09045 /TR=O01866 /GB=AAK18916.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025898(10), NM_001025897(11), NM_001025896(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025898 NCBI Caenorhabditis elegans D1007.10c (D1007.10) mRNA, complete cds. 10/11 None
NM_001025897 NCBI Caenorhabditis elegans D1007.10b (D1007.10) mRNA, complete cds. 11/11 None
NM_001025896 NCBI Caenorhabditis elegans D1007.10a (D1007.10) mRNA, complete cds. 11/11 None
SNAP00000011283 ENSEMBL cdna:SNAP chromosome:CEL140:I:4586275:4589357:1 11/11 None
GENEFINDER00000011301 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4587606:4589357:1 11/11 None
D1007.10b ENSEMBL cdna:known chromosome:CEL140:I:4586274:4589357:1 gene:D1007.10 11/11 A 
D1007.10c ENSEMBL cdna:known chromosome:CEL140:I:4586275:4589386:1 gene:D1007.10 10/11 A 
D1007.10a ENSEMBL cdna:known chromosome:CEL140:I:4587606:4589357:1 gene:D1007.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4587605-4589357(+) 93.7 100.0
Public Domain and Genome References
Ensembl D1007.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT68900 Hypothetical protein D1007.10b [Caenorhabditis elegans] ref|NP_001021068.1| D1007.10b [Caenorhabditis elegans] 0.0
blast AAK18916 Hypothetical protein D1007.10a [Caenorhabditis elegans] ref|NP_001021067.1| D1007.10a [Caenorhabditis elegans] pir||T30928 hypothetical protein D1007.10 - Caenorhabditis elegans 1.0E-132
blast AAT68900 Hypothetical protein D1007.10b [Caenorhabditis elegans] ref|NP_001021068.1| D1007.10b [Caenorhabditis elegans] 1.0E-111
blast AAK18916 Hypothetical protein D1007.10a [Caenorhabditis elegans] ref|NP_001021067.1| D1007.10a [Caenorhabditis elegans] pir||T30928 hypothetical protein D1007.10 - Caenorhabditis elegans 1.0E-110
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021068.1 5 108-127,202-224,245-267,272-291,344-366
NP_001021067.1 4 56-78,99-121,126-145,198-220
D1007.10b 5 108-127,202-224,245-267,272-291,344-366
D1007.10a 4 56-78,99-121,126-145,198-220
SNAP00000011283 5 108-127,202-224,245-267,272-291,344-366
GENEFINDER00000011301 4 56-78,99-121,126-145,198-220
Sequence
Target Sequence 
>C. ELEGANS:186293_AT
cttcgttctcgatgcaccgatttgacattattcgcttgttggtactgtttcattgcaatc
tgccacgtggcaacgaacacaattttcagtcgatatgtcaagacgatacatctagttcaa
aggccgttaaaaactagaatacgaggccaagccgtgtttcttgtgcaatttttcacgatg
aattctatcgcagcactcgctgcaatactttttggagccgctggacttagcttcatgttt
attcactttaattatgcagctattttgtttttggagagctatcgagtatttgttcgatcc
ttatttgtgctcggtcggctatcagtaagcacttcaactgctcgaatgaatgatattgaa
gaacagaaacacttatcagacgaagagattactgatttgattgtgaacagccagaaaaga
attggaaaatatttgaatttccggaatatctacataacctctacggttttcgtcactttt
cttctcaatattttatatgcgatcacgggtctcttgattaatcgaaaaatgcttgccttc
ggattcgcgatcggagccaaccaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCGTTCTCGATGCACCGATTTGA 368 219 157 Antisense
ATTATTCGCTTGTTGGTACTGTTTC 696 13 183 Antisense
GTACTGTTTCATTGCAATCTGCCAC 486 459 198 Antisense
TACGAGGCCAAGCCGTGTTTCTTGT 145 599 296 Antisense
AGCACTCGCTGCAATACTTTTTGGA 439 75 348 Antisense
AGCCGCTGGACTTAGCTTCATGTTT 76 83 372 Antisense
GTATTTGTTCGATCCTTATTTGTGC 254 451 442 Antisense
TATTTGTGCTCGGTCGGCTATCAGT 431 661 458 Antisense
CATAACCTCTACGGTTTTCGTCACT 623 213 609 Antisense
TTATATGCGATCACGGGTCTCTTGA 310 679 649 Antisense
ATTCGCGATCGGAGCCAACCAAGTT 214 9 699 Antisense
Sequence Source Affymetrix Proprietary Database