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[186292_at]

Description F32E10.7 /REP_DB=WormBase Gene ID /WP=CE24935 /TR=Q9N542 /GB=AAF60482.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 08      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.4
(-3)
A 		1.5
(-2.9)
A 		10.2
(3)
A 		9.7
(2.7)
A 		9
B 2.4
(-0.2)
A 		3.3
(3)
A 		1.6
(-3)
A 		2.7
(0.9)
A 		2
C 1
(-3)
A 		1.4
(-2.8)
A 		1.4
(-2.8)
A 		11.3
(3)
A 		10
avr 1.6
(-3) 		2.1
(-2.5) 		4.4
(-0.3) 		7.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 47.2
(3)
A 		2.2
(-2.9)
A 		1.7
(-2.9)
A 		1.4
(-3)
A 		2.1
(-2.9)
A 		1.3
(-3)
A 		46
B 1
(-2.5)
A 		1.5
(-1.2)
A 		3.1
(3)
A 		2.3
(0.9)
A 		0.8
(-3)
A 		1
(-2.5)
A 		2
C 1.5
(-2.8)
A 		1.4
(-3)
A 		3.9
(1.7)
A 		4.6
(3)
A 		2
(-1.9)
A 		1.5
(-2.8)
A 		3
avr 16.6
(3) 		1.7
(-2.8) 		2.9
(-2.4) 		2.8
(-2.4) 		1.6
(-2.9) 		1.3
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.5
(-2.5)
A 		0.3
(-3)
A 		2.7
(3)
A 		1.4
(-0.3)
A 		2
B 0.8
(3)
A 		0.8
(3)
A 		0.4
(-3)
A 		0.6
(-0)
A 		0
C 0.3
(-3)
A 		0.4
(-2.6)
A 		0.5
(-2.3)
A 		1.9
(3)
A 		2
avr 0.5
(-3) 		0.5
(-3) 		1.2
(2.3) 		1.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 8.7
(3)
A 		0.8
(-2.6)
A 		0.4
(-2.9)
A 		0.4
(-2.9)
A 		0.6
(-2.8)
A 		0.3
(-3)
A 		8
B 0.4
(-1.8)
A 		0.5
(-0.6)
A 		0.8
(3)
A 		0.6
(0.6)
A 		0.3
(-3)
A 		0.4
(-1.8)
A 		1
C 0.6
(-1)
A 		0.4
(-3)
A 		1
(3)
A 		0.9
(2)
A 		0.6
(-1)
A 		0.5
(-2)
A 		1
avr 3.2
(3) 		0.6
(-2.6) 		0.7
(-2.4) 		0.6
(-2.6) 		0.5
(-2.8) 		0.4
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9435
Sequence Type Exemplar sequence
Representative Public ID F32E10.7 NCBI
Target Description F32E10.7 /REP_DB=WormBase Gene ID /WP=CE24935 /TR=Q9N542 /GB=AAF60482.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068833 NCBI Caenorhabditis elegans F32E10.7 (F32E10.7) mRNA, complete cds. 11/11 None
SNAP00000033243 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7588997:7590477:1 11/11 None
GENEFINDER00000033248 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7588915:7596547:1 11/11 None
F32E10.7 ENSEMBL cdna:known chromosome:CEL140:IV:7588915:7590477:1 gene:F32E10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7588920-7590483(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32E10.7
Entrez Gene 185209 Entrez gene
SwissProt Q9N542 EMBL-EBI
WormBase CE24935 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60483 Temporarily assigned gene name protein 80 [Caenorhabditis elegans] ref|NP_501235.1| Temporarily Assigned Gene name family member (tag-80) [Caenorhabditis elegans] 0.0
blast CAE57131 Hypothetical protein CBG25053 [Caenorhabditis briggsae] 0.0
blast CAE57152 Hypothetical protein CBG25086 [Caenorhabditis briggsae] 0.0
blast AAK93854 Hypothetical protein F32E10.7 [Caenorhabditis elegans] ref|NP_501234.1| F32E10.7 [Caenorhabditis elegans] 1.0E-158
blast AAK93854 Hypothetical protein F32E10.7 [Caenorhabditis elegans] ref|NP_501234.1| F32E10.7 [Caenorhabditis elegans] 1.0E-152
blast CAE61924 Hypothetical protein CBG05921 [Caenorhabditis briggsae] 1.0E-123
blast CAE61924 Hypothetical protein CBG05921 [Caenorhabditis briggsae] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:186292_AT
tagaccatcgttattcgttaattcaaatggattcgatcccggagaatatggtcacaaatg
aaatggaagaacgattggccacaacacaaaatgaagatataatcccagaatcctcccaaa
gaagtccaataactccacggaaaatacatgaaaaacgagcatctattacggaagtgacaa
cagaaaaccttcggcatcgattccaaaaaatgaaatcacatttgactacatggttcaact
cacttgattatgatggtgaatacattttcgattttacgagtaaacctgaaaagtctgaaa
aactcggagaactcacaatgcaatacattgatgctctaagccaggcaataatgatatcat
ctcatattgaatattcgcatcatgtattatcatctaatcccaaatttcaacagatgtgca
ctcaattctgtgaatcgatattttcagtagcttttgatgaattaacttatcaattattgg
atgataaggttcaagaaacgctcaacgaatattgtggtcaaatagccgaagaagcccttc
aagcagctttcttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGACCATCGTTATTCGTTAATTCA 427 649 299 Antisense
TTCGATCCCGGAGAATATGGTCACA 433 693 330 Antisense
GGAAGAACGATTGGCCACAACACAA 306 531 363 Antisense
AGATATAATCCCAGAATCCTCCCAA 644 65 393 Antisense
GAATCCTCCCAAAGAAGTCCAATAA 136 329 406 Antisense
GAAAACCTTCGGCATCGATTCCAAA 289 355 481 Antisense
TGACTACATGGTTCAACTCACTTGA 461 569 521 Antisense
ATACATTGATGCTCTAAGCCAGGCA 189 25 621 Antisense
GATGTGCACTCAATTCTGTGAATCG 427 409 711 Antisense
GGTCAAATAGCCGAAGAAGCCCTTC 121 503 814 Antisense
GAAGCCCTTCAAGCAGCTTTCTTTA 165 345 829 Antisense
Sequence Source Affymetrix Proprietary Database