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[186291_at]

Description Y39C12A.5 /REP_DB=WormBase Gene ID /WP=CE21706 /TR=Q9U2L6 /GB=CAB60490.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 11      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 4.4
(-3)
A 		4.4
(-3)
A 		12.9
(-2.7)
A 		200
(3)
M 		196
B 72.8
(3)
A 		72.5
(3)
A 		9.2
(-3)
A 		33.6
(-0.7)
A 		64
C 14.1
(-2.6)
A 		34.7
(-1.5)
A 		5.7
(-3)
A 		121.8
(3)
P 		116
avr 30.4
(-1.8) 		37.2
(-1.5) 		9.3
(-3) 		118.5
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 84.7
(3)
A 		2.3
(-3)
A 		63
(1.4)
A 		9.9
(-2.4)
A 		30.3
(-1)
A 		13.6
(-2.2)
A 		82
B 33.9
(1.1)
A 		42.4
(2.3)
A 		5.9
(-3)
A 		15.9
(-1.5)
A 		47.1
(3)
A 		6.2
(-3)
A 		41
C 11.7
(-2.4)
A 		83.8
(3)
A 		20
(-1.8)
A 		6.7
(-2.8)
A 		3.5
(-3)
A 		23.5
(-1.5)
A 		80
avr 43.4
(3) 		42.8
(2.9) 		29.6
(0.5) 		10.8
(-3) 		27
(-0) 		14.4
(-2.3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 1.6
(-2.9)
A 		1
(-3)
A 		3.4
(-2.5)
A 		29.3
(3)
M 		28
B 23.2
(3)
A 		17.9
(1.5)
A 		2.1
(-3)
A 		7.2
(-1.5)
A 		21
C 4.7
(-2.1)
A 		10
(-0.4)
A 		2
(-3)
A 		20.5
(3)
P 		19
avr 9.8
(-0.3) 		9.6
(-0.4) 		2.5
(-3) 		19
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 15.6
(3)
A 		0.8
(-3)
A 		13.7
(2.2)
A 		2.5
(-2.3)
A 		9.2
(0.4)
A 		3.3
(-2)
A 		15
B 11.8
(0.5)
A 		14.1
(1.3)
A 		1.4
(-3)
A 		4.2
(-2.1)
A 		19.1
(3)
A 		2.3
(-2.7)
A 		18
C 4.3
(-2.2)
A 		25.6
(3)
A 		5.1
(-2)
A 		1.4
(-2.9)
A 		1.1
(-3)
A 		7.9
(-1.3)
A 		25
avr 10.6
(1.4) 		13.5
(3) 		6.7
(-0.8) 		2.7
(-3) 		9.8
(0.9) 		4.5
(-2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9412
Sequence Type Exemplar sequence
Representative Public ID Y39C12A.5 NCBI
Target Description Y39C12A.5 /REP_DB=WormBase Gene ID /WP=CE21706 /TR=Q9U2L6 /GB=CAB60490.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069922
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000019630 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12233805:12236082:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069922 8/11 Cross Hyb Matching Probes None
Y39C12A.5 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12233810-12236088(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60490 Hypothetical protein Y39C12A.5 [Caenorhabditis elegans] ref|NP_502323.2| Serpentine Receptor, class E (epsilon) family member (sre-16) [Caenorhabditis elegans] 1.0E-179
blast CAE62208 Hypothetical protein CBG06258 [Caenorhabditis briggsae] 2.0E-65
blast CAB60491 Hypothetical protein Y39C12A.6 [Caenorhabditis elegans] ref|NP_502324.1| Serpentine Receptor, class E (epsilon) family member (sre-19) [Caenorhabditis elegans] 5.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 5.6E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019630 7 15-34,46-65,85-107,128-147,152-174,214-236,246-263
Sequence
Target Sequence 
>C. ELEGANS:186291_AT
acttcctatattctacactttgcaatatgtgatgtaattatgaacattgtttcttatata
tttttaatatggaaccaaaaactaaatcgtaaatattatcatgataatcgccgtgtatct
aatcacacgtactctctcggagaacgatatcagatatctgaaaatattcgagttttcaag
tattacacccgttatgtatccattttgacgttttttataattgtatgcatattaagtgtt
attttttcattttctgctacccccaatgttcaacgcctcttgaaatttattttcaatctc
agctatactttattaactatttttgggccattcttttttcttcaaatgagcgattcttgg
caaaatgagttgcatgaaattctttccaaggttcgattgagaaaaaagtcaaaaattcaa
gacattgctgctaaggcaaagagtttgagaaatacgtttggaaaacaaatggattttgag
aggaagaagcattgtgacgcaggtatatttaatacctatgtgcctgcgtcattatattct
aagttcctctattacctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCCTATATTCTACACTTTGCAA 415 103 460 Antisense
GATAATCGCCGTGTATCTAATCACA 44 423 562 Antisense
TAATCACACGTACTCTCTCGGAGAA 520 635 579 Antisense
TTCGAGTTTTCAAGTATTACACCCG 517 695 626 Antisense
ACACCCGTTATGTATCCATTTTGAC 175 109 644 Antisense
CCCCAATGTTCAACGCCTCTTGAAA 508 259 720 Antisense
ATTTTCAATCTCAGCTATACTTTAT 177 15 748 Antisense
TATTAACTATTTTTGGGCCATTCTT 417 663 770 Antisense
TTAATACCTATGTGCCTGCGTCATT 277 683 968 Antisense
GTGCCTGCGTCATTATATTCTAAGT 302 477 979 Antisense
TATTCTAAGTTCCTCTATTACCTGA 464 663 994 Antisense
Sequence Source Affymetrix Proprietary Database