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[186290_at]

Description F43C11.1 /REP_DB=WormBase Gene ID /WP=CE20785 /TR=Q9U5B3 /GB=AAF16613.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 1.8
(-3)
A 		6.4
(-2.2)
A 		8.4
(-1.9)
A 		37.6
(3)
A 		36
B 3.1
(-2)
A 		2.3
(-3)
A 		5.8
(1.2)
A 		7.3
(3)
A 		5
C 8
(-2.4)
A 		3.4
(-3)
A 		5.2
(-2.8)
A 		50.7
(3)
A 		47
avr 4.3
(-2.9) 		4
(-3) 		6.5
(-2.5) 		31.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.9
(-2.7)
A 		4
(-2.5)
A 		25.8
(3)
A 		2.8
(-2.8)
A 		1.9
(-3)
A 		2.5
(-2.8)
A 		24
B 4.3
(-2.2)
A 		24.6
(3)
A 		1
(-3)
A 		2.2
(-2.7)
A 		3.3
(-2.4)
A 		1.1
(-3)
A 		24
C 1.5
(-3)
A 		5.1
(1.7)
A 		3.6
(-0.3)
A 		6.1
(3)
A 		2.8
(-1.3)
A 		1.6
(-2.9)
A 		5
avr 2.9
(-2.2) 		11.2
(3) 		10.1
(2.3) 		3.7
(-1.7) 		2.7
(-2.4) 		1.7
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-3)
A 		1.4
(-2.1)
A 		2.2
(-1.1)
A 		5.5
(3)
A 		5
B 1
(-0.3)
A 		0.6
(-3)
A 		1.3
(1.7)
A 		1.5
(3)
A 		1
C 2.6
(-1.7)
A 		1
(-3)
A 		1.8
(-2.4)
A 		8.6
(3)
A 		8
avr 1.4
(-2.4) 		1
(-3) 		1.8
(-1.9) 		5.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.4
(-1.9)
A 		5.6
(3)
A 		0.7
(-2.8)
A 		0.6
(-2.9)
A 		0.6
(-2.9)
A 		5
B 1.5
(-2)
A 		8.2
(3)
A 		0.2
(-3)
A 		0.6
(-2.7)
A 		1.3
(-2.2)
A 		0.4
(-2.9)
A 		8
C 0.5
(-3)
A 		1.5
(3)
A 		0.9
(-0.6)
A 		1.2
(1.2)
A 		0.9
(-0.6)
A 		0.5
(-3)
A 		1
avr 0.8
(-2.4) 		3.7
(3) 		2.2
(0.2) 		0.8
(-2.4) 		0.9
(-2.3) 		0.5
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5600
Sequence Type Exemplar sequence
Representative Public ID F43C11.1 NCBI
Target Description F43C11.1 /REP_DB=WormBase Gene ID /WP=CE20785 /TR=Q9U5B3 /GB=AAF16613.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061852 NCBI Caenorhabditis elegans F43C11.1 (F43C11.1) mRNA, complete cds. 11/11 None
SNAP00000013000 ENSEMBL cdna:SNAP chromosome:CEL140:II:2357126:2358072:1 10/11 None
GENEFINDER00000013019 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2357108:2358279:1 11/11 None
F43C11.1 ENSEMBL cdna:known chromosome:CEL140:II:2357096:2358072:1 gene:F43C11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2357094-2358071(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C11.1
Entrez Gene 185695 Entrez gene
SwissProt Q9U5B3 EMBL-EBI
WormBase CE20785 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF16613 Hypothetical protein F43C11.1 [Caenorhabditis elegans] ref|NP_494253.1| F43C11.1 [Caenorhabditis elegans] 1.0E-100
blast AAF16613 Hypothetical protein F43C11.1 [Caenorhabditis elegans] ref|NP_494253.1| F43C11.1 [Caenorhabditis elegans] 1.0E-96
blast AAF16613 Hypothetical protein F43C11.1 [Caenorhabditis elegans] ref|NP_494253.1| F43C11.1 [Caenorhabditis elegans] 8.0E-94
blast AAF16612 Hypothetical protein F43C11.2 [Caenorhabditis elegans] ref|NP_494252.1| F43C11.2 [Caenorhabditis elegans] 5.0E-52
blast AAF16612 Hypothetical protein F43C11.2 [Caenorhabditis elegans] ref|NP_494252.1| F43C11.2 [Caenorhabditis elegans] 5.0E-48
blast AAF16612 Hypothetical protein F43C11.2 [Caenorhabditis elegans] ref|NP_494252.1| F43C11.2 [Caenorhabditis elegans] 7.0E-47
blast AAB71071 Hypothetical protein ZK250.2 [Caenorhabditis elegans] ref|NP_494137.1| ZK250.2 [Caenorhabditis elegans] 2.0E-20
blast AAB71071 Hypothetical protein ZK250.2 [Caenorhabditis elegans] ref|NP_494137.1| ZK250.2 [Caenorhabditis elegans] 8.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 6.1E-40
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.2E-39
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 6.1E-40
Sequence
Target Sequence 
>C. ELEGANS:186290_AT
ttatgactctgtgtttgttcggccatgcccgtgccgaatgtccaatcgacacgtttacac
aggaaacaacttccagttctgctaaggtctgtctggagacctacactccagagtgtggaa
atttgacatcacttttcatcaatgaacaagacatagaaacctttgaacaagatggatgta
ctgtgttaaaatgtcctgcaggcgaaagaccgtggtttatgtcatcgttcgaaaacagtg
aatttccaaaacctactgctgaaaagccaagtaataataacgccattgacatcaacgcac
cacgttcaacagaacatgtggaacaaacgtttagtcaatttggaattgaatgtgatggcg
ataagtggaaggccaccaaatatccattggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGACTCTGTGTTTGTTCGGCCA 428 681 41 Antisense
CCAATCGACACGTTTACACAGGAAA 221 275 82 Antisense
ACTTCCAGTTCTGCTAAGGTCTGTC 136 105 109 Antisense
GGTCTGTCTGGAGACCTACACTCCA 340 501 126 Antisense
GATGTACTGTGTTAAAATGTCCTGC 582 409 215 Antisense
ATGTCCTGCAGGCGAAAGACCGTGG 656 47 231 Antisense
GACCGTGGTTTATGTCATCGTTCGA 694 381 248 Antisense
GTGAATTTCCAAAACCTACTGCTGA 440 461 278 Antisense
TAACGCCATTGACATCAACGCACCA 475 637 318 Antisense
CAACGCACCACGTTCAACAGAACAT 381 187 333 Antisense
GGAAGGCCACCAAATATCCATTGGG 669 531 407 Antisense
Sequence Source Affymetrix Proprietary Database